OgBench benchmarks GNNs on omics graphs in the n << p regime and reports that standard GNNs often fail to beat MLPs and classical baselines.
scgnn is a novel graph neural network framework for single-cell rna-seq analyses.Nature communications, 12(1):1882, 2021
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OgBench: A Framework for Evaluating Graph Neural Networks on Omics Data
OgBench benchmarks GNNs on omics graphs in the n << p regime and reports that standard GNNs often fail to beat MLPs and classical baselines.