Proves constant-dimension 3 reachability embeddings for directed trees, O(t log n) for treewidth-t graphs, with lower bounds of Omega(n) for general DAGs and Omega(t/log(n/t)) for treewidth t, plus real-dataset results.
10 Gene Ontology Consortium
3 Pith papers cite this work, alongside 80 external citations. Polarity classification is still indexing.
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80
external citations · OpenAlex
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OmicsLM integrates continuous omics embeddings into LLMs for multi-sample biological reasoning, matching specialized models on profile tasks while outperforming them and general LLMs on language-guided QA over real expression data.
A new schema-validated biomedical knowledge graph with rich properties and provenance, plus an LLM-agent validation showing 70% of sampled edges have literature support.
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Compact Geometric Representations of Hierarchies
Proves constant-dimension 3 reachability embeddings for directed trees, O(t log n) for treewidth-t graphs, with lower bounds of Omega(n) for general DAGs and Omega(t/log(n/t)) for treewidth t, plus real-dataset results.
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OmicsLM: A Multimodal Large Language Model for Multi-Sample Omics Reasoning
OmicsLM integrates continuous omics embeddings into LLMs for multi-sample biological reasoning, matching specialized models on profile tasks while outperforming them and general LLMs on language-guided QA over real expression data.
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Unifying biomedical knowledge in a modern multimodal graph
A new schema-validated biomedical knowledge graph with rich properties and provenance, plus an LLM-agent validation showing 70% of sampled edges have literature support.