A hierarchical graph built from both spatial and image-feature clustering improves joint gene expression prediction from whole slide histology images over 1-hop GNNs and prior transformer/CNN baselines.
Towards a general-purpose foundation model for computational pathol- ogy
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MERGE: Multi-faceted Hierarchical Graph-based GNN for Gene Expression Prediction from Whole Slide Histopathology Images
A hierarchical graph built from both spatial and image-feature clustering improves joint gene expression prediction from whole slide histology images over 1-hop GNNs and prior transformer/CNN baselines.