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BERTology Meets Biology: Interpreting Attention in Protein Language Models

3 Pith papers cite this work, alongside 28 external citations. Polarity classification is still indexing.

3 Pith papers citing it
28 external citations · external index

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UNVERDICTED 3

representative citing papers

Rethinking Attention with Performers

cs.LG · 2020-09-30 · unverdicted · novelty 7.0

Performers approximate full-rank softmax attention in Transformers via FAVOR+ random features for linear complexity, with theoretical guarantees of unbiased estimation and competitive results on pixel, text, and protein tasks.

Retrieval and competition: how a protein foundation model starts a protein

q-bio.BM · 2026-05-05 · unverdicted · novelty 6.0 · 2 refs

ESM2 predicts N-terminal methionine via retrieval of a positional prior from the BOS token through distributed attention circuits rather than direct recognition, revealed by a norm-direction decomposition of rotary attention scores.

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Showing 3 of 3 citing papers.

  • Rethinking Attention with Performers cs.LG · 2020-09-30 · unverdicted · none · ref 157

    Performers approximate full-rank softmax attention in Transformers via FAVOR+ random features for linear complexity, with theoretical guarantees of unbiased estimation and competitive results on pixel, text, and protein tasks.

  • Retrieval and competition: how a protein foundation model starts a protein q-bio.BM · 2026-05-05 · unverdicted · none · ref 7 · 2 links

    ESM2 predicts N-terminal methionine via retrieval of a positional prior from the BOS token through distributed attention circuits rather than direct recognition, revealed by a norm-direction decomposition of rotary attention scores.

  • Recent Advances in Generative AI for Healthcare Applications cs.LG · 2023-10-01 · unverdicted · none · ref 27

    A literature review synthesizing generative AI uses in healthcare with emphasis on diffusion and transformer models.