An adaptive hierarchical RMHMC sampler with closed-form leapfrog integrator and automatic mass matrix tuning for efficient MCMC in high-dimensional Bayesian problems.
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A whole-connectome stochastic simulator of C. elegans is used with SMC to impute membrane potentials from calcium fluorescence on synthetic data.
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Adaptive Riemannian Manifold Hamiltonian Monte Carlo with Hierarchical Metric
An adaptive hierarchical RMHMC sampler with closed-form leapfrog integrator and automatic mass matrix tuning for efficient MCMC in high-dimensional Bayesian problems.
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The Virtual Patch Clamp: Imputing C. elegans Membrane Potentials from Calcium Imaging
A whole-connectome stochastic simulator of C. elegans is used with SMC to impute membrane potentials from calcium fluorescence on synthetic data.