DeepScaffold generates valid, drug-like molecules that retain a given scaffold, and it extends scaffold-based generation to cyclic skeletons and side-chain property queries.
ChemGAN challenge for drug discovery: can AI reproduce natural chemical diversity?
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abstract
Generating molecules with desired chemical properties is important for drug discovery. The use of generative neural networks is promising for this task. However, from visual inspection, it often appears that generated samples lack diversity. In this paper, we quantify this internal chemical diversity, and we raise the following challenge: can a nontrivial AI model reproduce natural chemical diversity for desired molecules? To illustrate this question, we consider two generative models: a Reinforcement Learning model and the recently introduced ORGAN. Both fail at this challenge. We hope this challenge will stimulate research in this direction.
fields
q-bio.QM 1years
2019 1verdicts
CONDITIONAL 1representative citing papers
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DeepScaffold: a comprehensive tool for scaffold-based de novo drug discovery using deep learning
DeepScaffold generates valid, drug-like molecules that retain a given scaffold, and it extends scaffold-based generation to cyclic skeletons and side-chain property queries.