PepSpecBench is a unified benchmark that standardizes preprocessing, uses backbone-disjoint splits to prevent leakage, and adds multi-species plus perturbation tests for peptide MS/MS prediction models.
UniSpec: Deep learning for predicting the full range of peptide fragment ion series to enhance the proteomics data analysis workflow.Analytical Chemistry, 96(7):2906–2914
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PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction
PepSpecBench is a unified benchmark that standardizes preprocessing, uses backbone-disjoint splits to prevent leakage, and adds multi-species plus perturbation tests for peptide MS/MS prediction models.