RefusalBench shows strict refusal rates fail to rank frontier LLMs correctly on biological safety, with provider effects and partial-compliance patterns that binary metrics miss.
One-shot design of functional protein binders with BindCraft
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RosettaSearch applies LLM-driven multi-objective search at inference time to improve backbone-conditioned protein sequences, recovering designs with 18-68% better structural fidelity and 2.5x higher success rates than single-pass models like LigandMPNN.
Boltz-2 and fine-tuned DrugFormDTA lead ML-based binding prediction while GNINA leads docking tools on a cleaned antiviral dataset, with performance varying by viral protein.
citing papers explorer
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RefusalBench: Why Refusal Rate Misranks Frontier LLMs on Biological Research Prompts
RefusalBench shows strict refusal rates fail to rank frontier LLMs correctly on biological safety, with provider effects and partial-compliance patterns that binary metrics miss.
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RosettaSearch: Multi-Objective Inference-Time Search for Protein Sequence Design
RosettaSearch applies LLM-driven multi-objective search at inference time to improve backbone-conditioned protein sequences, recovering designs with 18-68% better structural fidelity and 2.5x higher success rates than single-pass models like LigandMPNN.
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Benchmarking open-source tools for in silico antiviral drug discovery
Boltz-2 and fine-tuned DrugFormDTA lead ML-based binding prediction while GNINA leads docking tools on a cleaned antiviral dataset, with performance varying by viral protein.