Germline-absorbing discrete diffusion uses the germline sequence as the absorbing state to reduce germline bias in antibody modeling, raising non-germline residue prediction accuracy from 26% to 46% and improving conditional generation tradeoffs over EvoProtGrad.
ProGen2: Exploring the boundaries of protein language models.Cell Systems, 14(11):968–978
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Conditional generation of antibody sequences with classifier-guided germline-absorbing discrete diffusion
Germline-absorbing discrete diffusion uses the germline sequence as the absorbing state to reduce germline bias in antibody modeling, raising non-germline residue prediction accuracy from 26% to 46% and improving conditional generation tradeoffs over EvoProtGrad.