Near an optimum, performance landscapes have many soft parameter directions, so the entropy of parameter variation can be extensive even when average performance is essentially optimal.
Rediscovering the power of pairwise interactions
1 Pith paper cite this work. Polarity classification is still indexing.
abstract
Two recent streams of work suggest that pairwise interactions may be sufficient to capture the complexity of biological systems ranging from protein structure to networks of neurons. In one approach, possible amino acid sequences in a family of proteins are generated by Monte Carlo annealing of a "Hamiltonian" that forces pairwise correlations among amino acid substitutions to be close to the observed correlations. In the other approach, the observed correlations among pairs of neurons are used to construct a maximum entropy model for the states of the network as a whole. We show that, in certain limits, these two approaches are mathematically equivalent, and we comment on open problems suggested by this framework
citation-role summary
citation-polarity summary
fields
q-bio.QM 1years
2025 1verdicts
CONDITIONAL 1roles
background 1polarities
unclear 1representative citing papers
citing papers explorer
-
Optimization and variability can coexist
Near an optimum, performance landscapes have many soft parameter directions, so the entropy of parameter variation can be extensive even when average performance is essentially optimal.