BioXArena benchmarks LLM agents on generating end-to-end ML pipelines for 76 multi-modal biomedical tasks, with MLEvolve plus Gemini-3.1-Pro scoring highest at 0.666.
Accurate prediction of protein structures and interactions using a three-track neural network.Science, 373(6557):871–876
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A genome-conditioned 4B LLM agent predicts microbial life boundaries and matches larger frontier models via token fusion, tool use, and a counterfactual gene-grounding reward.
Yeti is a compact tokenizer for protein structures that delivers strong codebook use, token diversity, and reconstruction while enabling from-scratch multimodal generation of plausible sequences and structures with 10x fewer parameters than ESM3.
citing papers explorer
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BioXArena: Benchmarking LLM Agents on Multi-Modal Biomedical Machine Learning Tasks
BioXArena benchmarks LLM agents on generating end-to-end ML pipelines for 76 multi-modal biomedical tasks, with MLEvolve plus Gemini-3.1-Pro scoring highest at 0.666.
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GGBound: A Genome-Grounded Agent for Microbial Life-Boundary Prediction
A genome-conditioned 4B LLM agent predicts microbial life boundaries and matches larger frontier models via token fusion, tool use, and a counterfactual gene-grounding reward.
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Yeti: A compact protein structure tokenizer for reconstruction and multi-modal generation
Yeti is a compact tokenizer for protein structures that delivers strong codebook use, token diversity, and reconstruction while enabling from-scratch multimodal generation of plausible sequences and structures with 10x fewer parameters than ESM3.