MoleCode is a training-free, LLM-native representation that makes molecular graphs with explicit atoms, bonds, and topology directly readable and editable in language models, improving structural tasks over implicit string encodings.
Unicorn: A unified contrastive learning approach for multi-view molecular representation learning.arXiv preprint arXiv:2405.10343
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BiScale-GTR achieves claimed state-of-the-art results on MoleculeNet, PharmaBench and LRGB by combining improved fragment tokenization with a parallel GNN-Transformer architecture that operates at both atom and fragment scales.
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MoleCode unlocks structural intelligence in large language models
MoleCode is a training-free, LLM-native representation that makes molecular graphs with explicit atoms, bonds, and topology directly readable and editable in language models, improving structural tasks over implicit string encodings.
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BiScale-GTR: Fragment-Aware Graph Transformers for Multi-Scale Molecular Representation Learning
BiScale-GTR achieves claimed state-of-the-art results on MoleculeNet, PharmaBench and LRGB by combining improved fragment tokenization with a parallel GNN-Transformer architecture that operates at both atom and fragment scales.