MERGE-RNA uses maximum-entropy modeling of the DMS probing pipeline to learn a small set of transferable parameters that predict RNA secondary structure ensembles matching experimental reactivity better than standard pseudo-free-energy approaches.
Advances in RNA structure analysis by chemical probing.Current Opinion in Structural Biology, 20(3):295–304, June 2010
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MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing
MERGE-RNA uses maximum-entropy modeling of the DMS probing pipeline to learn a small set of transferable parameters that predict RNA secondary structure ensembles matching experimental reactivity better than standard pseudo-free-energy approaches.