NeuroEmbed combines ontology-based metadata normalization and synonym expansion with contrastive fine-tuning of PubMedBERT, improving retrieval of neurodegenerative disease cohorts on a synthetic question-answering benchmark.
(2025) ‘Large language models for data extraction from unstructured and semi-structured electronic health records: a multiple model performance evaluation’
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Enhancing Omics Cohort Discovery for Research on Neurodegeneration through Ontology-Augmented Embedding Models
NeuroEmbed combines ontology-based metadata normalization and synonym expansion with contrastive fine-tuning of PubMedBERT, improving retrieval of neurodegenerative disease cohorts on a synthetic question-answering benchmark.