DNA pretraining suffers from inappropriate evaluation datasets, flawed neighbor-masking, and neglected vocabulary design; the authors supply guidelines and a reproducible testbed to fix them.
K-mer content, correlation, and po- sition analysis of genome dna sequences for the identifica- tion of function and evolutionary features.Genes, 8(4):122
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In Search of Lost DNA Sequence Pretraining
DNA pretraining suffers from inappropriate evaluation datasets, flawed neighbor-masking, and neglected vocabulary design; the authors supply guidelines and a reproducible testbed to fix them.