A CNN-Transformer trained on longitudinal 3D MRIs claims high accuracy for predicting next-scan hepatocellular carcinoma, but its time-aware positional encoding reveals the future diagnosis date to the model.
Improving Medical Multi-modal Contrastive Learning with Expert Annotations
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abstract
We introduce eCLIP, an enhanced version of the CLIP model that integrates expert annotations in the form of radiologist eye-gaze heatmaps. It tackles key challenges in contrastive multi-modal medical imaging analysis, notably data scarcity and the "modality gap" -- a significant disparity between image and text embeddings that diminishes the quality of representations and hampers cross-modal interoperability. eCLIP integrates a heatmap processor and leverages mixup augmentation to efficiently utilize the scarce expert annotations, thus boosting the model's learning effectiveness. eCLIP is designed to be generally applicable to any variant of CLIP without requiring any modifications of the core architecture. Through detailed evaluations across several tasks, including zero-shot inference, linear probing, cross-modal retrieval, and Retrieval Augmented Generation (RAG) of radiology reports using a frozen Large Language Model, eCLIP showcases consistent improvements in embedding quality. The outcomes reveal enhanced alignment and uniformity, affirming eCLIP's capability to harness high-quality annotations for enriched multi-modal analysis in the medical imaging domain.
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cs.CV 1years
2025 1verdicts
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A CNN-Transformer for Classification of Longitudinal 3D MRI Images -- A Case Study on Hepatocellular Carcinoma Prediction
A CNN-Transformer trained on longitudinal 3D MRIs claims high accuracy for predicting next-scan hepatocellular carcinoma, but its time-aware positional encoding reveals the future diagnosis date to the model.