Contrastive fine-tuning of protein language models on Pfam, structural, interaction, and mutational datasets produces embeddings that improve kNN performance on 15-16 of 23 downstream tasks including remote homology detection and structural retrieval.
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ProtSent: Protein Sentence Transformers
Contrastive fine-tuning of protein language models on Pfam, structural, interaction, and mutational datasets produces embeddings that improve kNN performance on 15-16 of 23 downstream tasks including remote homology detection and structural retrieval.