VeloTree infers differentiation trees from RNA velocity fields by defining cell dissimilarity as the squared varifold distance between integral curves of the velocity field.
Theis, Heiko Lickert, Mostafa Bakhti, Allon Klein, and Barbara Treutlein
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EntroPath defines a free-energy dissimilarity from maximum-entropy random walk path ensembles and proves it converges to squared geodesic distance in the short-time limit via Varadhan's formula.
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VeloTree: Inferring single-cell trajectories from RNA velocity fields with varifold distances
VeloTree infers differentiation trees from RNA velocity fields by defining cell dissimilarity as the squared varifold distance between integral curves of the velocity field.
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EntroPath: Maximum Entropy Path Ensemble Embedding for Manifold Learning
EntroPath defines a free-energy dissimilarity from maximum-entropy random walk path ensembles and proves it converges to squared geodesic distance in the short-time limit via Varadhan's formula.