trAIce3D is a prompt-driven 3D transformer U-Net that detects microglial somas and segments their branches, reporting soma F1 of 87.5 percent and branch Dice of 0.63 on a 41,230-cell mouse brain dataset.
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trAIce3D: A Prompt-Driven Transformer Based U-Net for Semantic Segmentation of Microglial Cells from Large-Scale 3D Microscopy Images
trAIce3D is a prompt-driven 3D transformer U-Net that detects microglial somas and segments their branches, reporting soma F1 of 87.5 percent and branch Dice of 0.63 on a 41,230-cell mouse brain dataset.