VibeProteinBench is a new benchmark evaluating LLMs on open-ended language-interfaced protein design across recognition, engineering, and generation, with no model showing strong performance in all areas.
Pdb-struct: A comprehensive benchmark for structure-based protein design
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SurfDesign introduces surface-conditioned protein design via manifold modeling and equivariant message passing on surfaces integrated with pretrained language models, outperforming prior methods on binder and enzyme design benchmarks.
citing papers explorer
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VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design
VibeProteinBench is a new benchmark evaluating LLMs on open-ended language-interfaced protein design across recognition, engineering, and generation, with no model showing strong performance in all areas.
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SurfDesign: Effective Protein Design on Molecular Surfaces
SurfDesign introduces surface-conditioned protein design via manifold modeling and equivariant message passing on surfaces integrated with pretrained language models, outperforming prior methods on binder and enzyme design benchmarks.