Contrastively trained k-mer embeddings can map simulated ancient DNA reads to a bacterial reference with accuracy on par with BWA-aln, using a bitwise coordinate prediction head.
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Briggs, Udo Stenzel, Philip L
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Learning Genomic Structure from $k$-mers
Contrastively trained k-mer embeddings can map simulated ancient DNA reads to a bacterial reference with accuracy on par with BWA-aln, using a bitwise coordinate prediction head.