OgBench benchmarks GNNs on omics graphs in the n << p regime and reports that standard GNNs often fail to beat MLPs and classical baselines.
Proteome-wide prediction of the mode of inheritance and molecular mechanisms underlying genetic diseases using structural interactomics.iScience, 28(7):112812, 2025
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OgBench: A Framework for Evaluating Graph Neural Networks on Omics Data
OgBench benchmarks GNNs on omics graphs in the n << p regime and reports that standard GNNs often fail to beat MLPs and classical baselines.