BiScale-GTR achieves claimed state-of-the-art results on MoleculeNet, PharmaBench and LRGB by combining improved fragment tokenization with a parallel GNN-Transformer architecture that operates at both atom and fragment scales.
Learn molecular representations from large-scale unlabeled molecules for drug discovery.arXiv preprint arXiv:2012.11175
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BiScale-GTR: Fragment-Aware Graph Transformers for Multi-Scale Molecular Representation Learning
BiScale-GTR achieves claimed state-of-the-art results on MoleculeNet, PharmaBench and LRGB by combining improved fragment tokenization with a parallel GNN-Transformer architecture that operates at both atom and fragment scales.