HyperEvoGen uses hyperbolic variational inference to learn phylogenetic representations from protein alignments that preserve hierarchy and scale with evolutionary divergence, outperforming baselines in ancestral reconstruction on simulated data.
Journal of Molecular Evolution92(2), 181–206 (2024) https://doi
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HyperEvoGen: Exploring deep phylogeny using non-Euclidean variational inference
HyperEvoGen uses hyperbolic variational inference to learn phylogenetic representations from protein alignments that preserve hierarchy and scale with evolutionary divergence, outperforming baselines in ancestral reconstruction on simulated data.