BioMatrix unifies sequences, structures, and language for molecules and proteins inside one decoder-only foundation model via shared discrete tokens and achieves SOTA or competitive results on 77 of 80 downstream tasks.
A text-guided protein design framework
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STELLA aligns ESM3 bimodal sequence-structure encodings with Llama-3.1-8B text modeling to claim state-of-the-art results on protein functional description prediction and enzyme-catalyzed reaction prediction.
The paper surveys data-centric strategies for foundation models in computational healthcare and supplies a curated list of related models and datasets.
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BioMatrix: Towards a Comprehensive Biological Foundation Model Spanning the Modality Matrix of Sequences, Structures, and Language
BioMatrix unifies sequences, structures, and language for molecules and proteins inside one decoder-only foundation model via shared discrete tokens and achieves SOTA or competitive results on 77 of 80 downstream tasks.
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STELLA: A Multimodal LLM for Protein Functional Annotation via Unified Sequence-Structure Encoding
STELLA aligns ESM3 bimodal sequence-structure encodings with Llama-3.1-8B text modeling to claim state-of-the-art results on protein functional description prediction and enzyme-catalyzed reaction prediction.
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Data-Centric Foundation Models in Computational Healthcare: A Survey
The paper surveys data-centric strategies for foundation models in computational healthcare and supplies a curated list of related models and datasets.