PhylaFlow applies hybrid flow matching in BHV tree space to learn posterior-basin transport, reducing initial Tree-KL and improving topology recovery after finite-budget MrBayes refinement on most of eight phylogenetic benchmarks.
Ultrafast Sample placement on Existing tRees (
2 Pith papers cite this work. Polarity classification is still indexing.
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SMC forgets its initial condition geometrically in the jump chain and as 1/ℓ in continuous genetic distance, justifying independent-locus approximations.
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PhylaFlow: Hybrid Flow Matching in Billera-Holmes-Vogtmann Tree Space for Phylogenetic Inference
PhylaFlow applies hybrid flow matching in BHV tree space to learn posterior-basin transport, reducing initial Tree-KL and improving topology recovery after finite-budget MrBayes refinement on most of eight phylogenetic benchmarks.
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Rates of forgetting for the sequentially Markov coalescent
SMC forgets its initial condition geometrically in the jump chain and as 1/ℓ in continuous genetic distance, justifying independent-locus approximations.