A new 52-article annotated corpus and baseline NER experiments show that bioinformatics workflow entities can be extracted with 70.4 F1 using SciBERT, supporting the feasibility of automated workflow documentation.
Future Generation Computer Systems75, 284–298 (2017)
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Extracting Information in a Low-resource Setting: Case Study on Bioinformatics Workflows
A new 52-article annotated corpus and baseline NER experiments show that bioinformatics workflow entities can be extracted with 70.4 F1 using SciBERT, supporting the feasibility of automated workflow documentation.