A comprehensive benchmark of 17 protein foundation models across 38 tasks yields task correlations, a streamlined protocol, and identifies ProTrek as the strongest general performer.
Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map.Journal of cheminformatics, 13:1–10, 2021
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PFMBench: Protein Foundation Model Benchmark
A comprehensive benchmark of 17 protein foundation models across 38 tasks yields task correlations, a streamlined protocol, and identifies ProTrek as the strongest general performer.