TCRTransBench provides a new benchmark with bidirectional TCR-peptide generation tasks, a large validated dataset, and metrics to evaluate neural models for immunological sequence modeling.
IEEE transactions on pattern analysis and machine intelligence , volume=
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AROMA combines text, graph topology, and protein sequences with augmented reasoning and two-stage optimization to deliver more accurate and interpretable predictions of genetic perturbation effects in virtual cells, outperforming baselines even in zero-shot and long-tail settings.
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TCRTransBench: A Comprehensive Benchmark for Bidirectional TCR-Peptide Sequence Generation
TCRTransBench provides a new benchmark with bidirectional TCR-peptide generation tasks, a large validated dataset, and metrics to evaluate neural models for immunological sequence modeling.
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AROMA: Augmented Reasoning Over a Multimodal Architecture for Virtual Cell Genetic Perturbation Modeling
AROMA combines text, graph topology, and protein sequences with augmented reasoning and two-stage optimization to deliver more accurate and interpretable predictions of genetic perturbation effects in virtual cells, outperforming baselines even in zero-shot and long-tail settings.