Polygenic score workflows achieved highest discrimination for 53 of 80 openSNP phenotypes while machine-learning or deep-learning workflows did so for 27, with 41.2% of comparisons as practical ties and performance highly phenotype-dependent.
Eye-color and type-2 diabetes phenotype prediction from genotype data using deep learning methods.BMC Bioinformatics, 22(1), April 2021
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Benchmarking end-to-end genotype-to-phenotype prediction workflows across 80 openSNP phenotypes
Polygenic score workflows achieved highest discrimination for 53 of 80 openSNP phenotypes while machine-learning or deep-learning workflows did so for 27, with 41.2% of comparisons as practical ties and performance highly phenotype-dependent.