DNA pretraining suffers from inappropriate evaluation datasets, flawed neighbor-masking, and neglected vocabulary design; the authors supply guidelines and a reproducible testbed to fix them.
Ch ip-atlas: a data-mining suite powered by full integration of public ch ip-seq data.EMBO reports, 19(12):e46255
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In Search of Lost DNA Sequence Pretraining
DNA pretraining suffers from inappropriate evaluation datasets, flawed neighbor-masking, and neglected vocabulary design; the authors supply guidelines and a reproducible testbed to fix them.