PepSpecBench is a unified benchmark that standardizes preprocessing, uses backbone-disjoint splits to prevent leakage, and adds multi-species plus perturbation tests for peptide MS/MS prediction models.
Full-spectrum prediction of peptides tandem mass spectra using deep neural network.Analytical Chemistry, 92(6): 4275–4283, 2020
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PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction
PepSpecBench is a unified benchmark that standardizes preprocessing, uses backbone-disjoint splits to prevent leakage, and adds multi-species plus perturbation tests for peptide MS/MS prediction models.