STAGED uses agent-based graph neural ODEs to model and predict gene expression dynamics from spatial transcriptomics, recovering simulated cell-cell and gene-gene interactions in small synthetic systems.
Manifold interpolating optimal-transport flows for trajectory inference
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STAGED: A Multi-Agent Neural Network for Learning Cellular Interaction Dynamics
STAGED uses agent-based graph neural ODEs to model and predict gene expression dynamics from spatial transcriptomics, recovering simulated cell-cell and gene-gene interactions in small synthetic systems.