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arXiv:2605.15364 · detector doi_compliance · incontrovertible · 2026-05-19 15:31:14.164168+00:00

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S. Maramizonouz, S. Nadimi, Powder Technol 412, 117964 (2022). DOI 10.1016/j.powtec. 2022.117964 A geometry-dependent, force-balance driven model of biofilm cell cluster detachment 37 Appendix A detailed list of all parameters utilized in iDynoMiCS are given in Tables A1 and A2. Several parameters were updated to be representative of an S. epidermidis biofilm. 38 Y . Xu, J.A.F. Kreig, Z. Wang, E.J. Stewart, R.A. Luke, and S.D. Olson Parameter Description Value endOfSimulation Duration of biofilm growth (days) 1 (EXP) timeStepIni Baseline or initial time step for solutes (h) 0.1 timeStepMin Minimum adaptive time step (h) 0.05 timeStepMax Maximum adaptive time step (h) 0.2 agentTimeStep Fixed agent time step (h) 0.05 x,y,z Dimensions of the domain (µ m) 66×2×33 for 2-d; 66 ×66×33 for 3-d (EXP) resolution For agent grid (µ m) 1 (EXP) For solute grid (µ m) 2 boundaryLayer Area between biofilm and bulk (µ m) 13 (EXP) maxTh Maximum biofilm height allowed (µm) 20 specificArea Ratio between substratum and bulk com- partment volume (m 2/m3) 0.015 (EXP) 𝑁 0 𝐵 Initial number of 𝐵 10 in 2-d; 160 in 3-d (EXP) 𝑁 0 𝐸 Initial number of 𝐸 0 in 2-d and 3-d shovingMaxNodes Maximum number of agents to apply shov- ing algorithm 2×106 shovingFraction Equilibrium accepted when moving/shoved agents below this threshold 0.025 shovingMaxIter Maximum number of iterations to reach fi- nal position 250 shovingMutual Shoving applied to all overlapping agents true shovingMaxNodes Maximum number of agents t

Evidence payload

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