pith. sign in

arxiv: 1108.4642 · v1 · pith:C4NJMB65new · submitted 2011-08-23 · 🧬 q-bio.PE · cs.DS

A note on efficient computation of hybridization number via softwired clusters

classification 🧬 q-bio.PE cs.DS
keywords hybridizationnumberproblemclusterssoftwiredacyclicagreementalgorithm
0
0 comments X
read the original abstract

Here we present a new fixed parameter tractable algorithm to compute the hybridization number r of two rooted binary phylogenetic trees on taxon set X in time (6r)^r.poly(n), where n=|X|. The novelty of this approach is that it avoids the use of Maximum Acyclic Agreement Forests (MAAFs) and instead exploits the equivalence of the problem with a related problem from the softwired clusters literature. This offers an alternative perspective on the underlying combinatorial structure of the hybridization number problem.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.