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arxiv: 1408.4081 · v1 · pith:7VI34PWOnew · submitted 2014-08-18 · 🧬 q-bio.QM · q-bio.GN· q-bio.PE

CloudSTRUCTURE: infer population STRUCTURE on the cloud

classification 🧬 q-bio.QM q-bio.GNq-bio.PE
keywords structurecloudstructurepopulationapplicationvaluesacrossadditionanalyses
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We present CloudSTRUCTURE, an application for running parallel analyses with the population genetics program STRUCTURE. The HPC ready application, powered by iPlant cyber-infrastructure, provides a fast (by parallelization) and convenient (through a user friendly GUI) way to calculate like-lihood values across multiple values of K (number of genetic groups) and numbers of iterations. The results are automati-cally summarized for easier determination of the K value that best fit the data. In addition, CloudSTRUCTURE will reformat STRUCTURE output for use in downstream programs, such as TASSEL for association analysis with population structure ef-fects stratified.

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