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arxiv: 1503.00831 · v2 · pith:SY4KT6W4new · submitted 2015-03-03 · 🧬 q-bio.PE

Capturing a phylogenetic tree when the number of character states varies with the number of leaves

classification 🧬 q-bio.PE
keywords alphabetacapturecharactercharactersleaveslfloornumber
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We show that for any two values $\alpha, \beta >0 $ for which $\alpha+\beta>1$ then there is a value $N$ so that for all $n \geq N$ the following holds. For any binary phylogenetic tree $T$ on $n$ leaves there is a set of $\lfloor n^\alpha \rfloor$ characters that capture $T$, and for which each character takes at most $\lfloor n^\beta \rfloor$ distinct states. Here `capture' means that $T$ is the unique perfect phylogeny for these characters. Our short proof of this combinatorial result is based on the probabilistic method.

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