Pith. sign in

REVIEW

Reconstruction of time-consistent species trees

Not yet reviewed by Pith; the record is open.

This paper has not been read by Pith yet. Machine review is queued; the pith claim, tier, and objections will appear here once it completes.

SPECIMEN: schema-true, not a live event

T0 review · schema-true

One-sentence machine reading of the paper's core claim.

pith:XXXXXXXX · record.json · timestamp

arxiv 1910.13123 v1 pith:VQJDAGN4 submitted 2019-10-29 cs.DM cs.DSmath.CO

classification cs.DMcs.DSmath.CO
keywords genespeciestreeevent-labeledtreestime-consistentcasewhether
verification ladder T0 review T1 audit T2 compute T3 formal
0 comments
read the original abstract

The history of gene families -- which are equivalent to event-labeled gene trees -- can to some extent be reconstructed from empirically estimated evolutionary event-relations containing pairs of orthologous, paralogous or xenologous genes. The question then arises as whether inferred event-labeled gene trees are "biologically feasible" which is the case if one can find a species tree with which the gene tree can be reconciled in a time-consistent way. In this contribution, we consider event-labeled gene trees that contain speciation, duplication as well as horizontal gene transfer and we assume that the species tree is unknown. We provide a cubic-time algorithm to decide whether a "time-consistent" binary species for a given event-labeled gene tree exists and, in the affirmative case, to construct the species tree within the same time-complexity.

Discussion (0). Continue with ORCID to comment.

Pith tools