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Adaptive Storey's null proportion estimator

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arxiv 2310.06357 v1 pith:J6O6IZAP submitted 2023-10-10 stat.ME stat.AP

classification stat.MEstat.AP
keywords adaptiveestimatornullprocedureproportionstoreyhyper-parameterspower
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False discovery rate (FDR) is a commonly used criterion in multiple testing and the Benjamini-Hochberg (BH) procedure is arguably the most popular approach with FDR guarantee. To improve power, the adaptive BH procedure has been proposed by incorporating various null proportion estimators, among which Storey's estimator has gained substantial popularity. The performance of Storey's estimator hinges on a critical hyper-parameter, where a pre-fixed configuration lacks power and existing data-driven hyper-parameters compromise the FDR control. In this work, we propose a novel class of adaptive hyper-parameters and establish the FDR control of the associated BH procedure using a martingale argument. Within this class of data-driven hyper-parameters, we present a specific configuration designed to maximize the number of rejections and characterize the convergence of this proposal to the optimal hyper-parameter under a commonly-used mixture model. We evaluate our adaptive Storey's null proportion estimator and the associated BH procedure on extensive simulated data and a motivating protein dataset. Our proposal exhibits significant power gains when dealing with a considerable proportion of weak non-nulls or a conservative null distribution.

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Cited by 1 Pith paper

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. False Discovery Control in Multiple Testing: A Brief Overview of Theories and Methodologies

    stat.ME 2024-11 accept novelty 2.0 of 10

    This is a survey of false discovery rate control methods, organized into ranking, FDP estimation, and thresholding steps.

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