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Paper Citation Record · LEDGER

Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

As of 7 August 2026, this Paper Citation Record lists 0 of 0 outbound references and 13 inbound Pith citation observations for arXiv:2405.15489.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2405.15489 v1

Coverage vector

measured 0 of 0 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links

measured 13 of 13 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00

measured 13 of 13 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-07T15:18:53.460195Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-02T07:06:44.173513Z

Reference resolution

0 of 0 outbound references displayed

  • verified exact0
  • verified fuzzy0
  • unresolved0
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

No outbound reference observations are available for this paper version.

Pith citing papers

Observation d2c7f045-5afd-4730-9113-14e3e8151be9 · inbound

VARD: Efficient and Dense Fine-Tuning for Diffusion Models with Value-based RL cites this paper.

VARD: Efficient and Dense Fine-Tuning for Diffusion Models with Value-based RL Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 2

Resolution
unresolved
no resolver link, observed 2026-08-07T15:18:53.460195Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T15:18:53.460195Z digest=sha256:b31340011a4aef4607bf78da5e58f458d8e20d5d781cf8de09b2e3ef77df4460

Observation 90dca2a9-01b9-451d-bd83-dd79472d3fee · inbound

La-Proteina: Atomistic Protein Generation via Partially Latent Flow Matching cites this paper.

La-Proteina: Atomistic Protein Generation via Partially Latent Flow Matching Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-06T18:00:53.109882Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-06T18:00:53.109882Z digest=sha256:1d81c4afdcfbaea20a72c87baf5e61a0a32aeef7a0fe2256b87d556046c07fe8

Observation 82b0f6d2-c433-43df-b9cc-08609c1eb70a · inbound

Protein-SE(3): Benchmarking SE(3)-based Generative Models for Protein Structure Design cites this paper.

Protein-SE(3): Benchmarking SE(3)-based Generative Models for Protein Structure Design Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 19

Resolution
unresolved
no resolver link, observed 2026-08-06T13:45:52.291369Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-06T13:45:52.291369Z digest=sha256:6472f13c1578d0768ec89d0a0f1fd8da521a0ae687485e9be32460f9145709e8

Observation b1b54801-a666-4398-8830-15c7064e63fd · inbound

Calibrating Generative Models to Distributional Constraints cites this paper.

Calibrating Generative Models to Distributional Constraints Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 43

Resolution
unresolved
no resolver link, observed 2026-08-04T10:27:59.764208Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-04T10:27:59.764208Z digest=sha256:9a251e55492e2a77615f1107baab0d0a88c1a3dd5296581279c6c551b00b1fe6

Observation 6d2d6ea5-b322-4686-8a77-55665cd08515 · inbound

HD-Prot: A Protein Language Model for Joint Sequence-Structure Modeling with Continuous Structure Tokens cites this paper.

HD-Prot: A Protein Language Model for Joint Sequence-Structure Modeling with Continuous Structure Tokens Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 7

Resolution
unresolved
no resolver link, observed 2026-08-03T16:07:37.519040Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-03T16:07:37.519040Z digest=sha256:78f1a66c456fc040a1953143a8484a636baf91d0f7225f738ceb5f1cb5a1adcb

Observation 8ef34458-a496-4233-b15c-95d96f173ae9 · inbound

Protein Autoregressive Modeling via Multiscale Structure Generation cites this paper.

Protein Autoregressive Modeling via Multiscale Structure Generation Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 32

Resolution
verified exact
arxiv_id, observed 2026-05-21T13:24:11.278386Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-05-21T13:21:53.668727Z digest=sha256:529ae63c581280729c4c36e659c4cbc1311289db46a3df3e59c7fba3ef1add49

Observation 3883330b-a78d-4dc0-9747-4c6009a98ba8 · inbound

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators cites this paper.

Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 31

Resolution
unresolved
no resolver link, observed 2026-08-03T01:06:03.892189Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-03T01:06:03.892189Z digest=sha256:f290284ba6157ba25c1510ac1750e15726c7a0c570ebd26cb47e68163bbd261e

Observation 00361f37-3c47-4f4d-84e4-5339f85ae591 · inbound

ProHiFlo: Hierarchical Flow Matching with Functional Guidance for De Novo Protein Generation cites this paper.

ProHiFlo: Hierarchical Flow Matching with Functional Guidance for De Novo Protein Generation Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 26

Resolution
verified exact
arxiv_id, observed 2026-07-02T07:06:44.175012Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-06-28T07:11:28.600100Z digest=sha256:d561d9194f056fcfdcd1b1f339b98e81fcafeeeeef33f9a19e1cc7959178e520

Observation 9101eb03-5b1b-457f-8944-c8699f2095f4 · inbound

Design-CP: Context Parallelism for Design of Protein Nanoparticles cites this paper.

Design-CP: Context Parallelism for Design of Protein Nanoparticles Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 49

Resolution
unresolved
no resolver link, observed 2026-07-12T02:29:52.764344Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-07-12T02:29:52.764344Z digest=sha256:15ceecb30aadbf783e57a8e0648972594c0aa54c28a2f6bf32ccd77138856ad1

Observation bac450ba-9740-487a-b9bc-a85d8cba6d8e · inbound

Variable-Length Generative Protein Design via Generalized Poisson Flow cites this paper.

Variable-Length Generative Protein Design via Generalized Poisson Flow Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 33

Resolution
unresolved
no resolver link, observed 2026-07-13T00:48:08.651522Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-07-13T00:48:08.651522Z digest=sha256:069dfaae3fa3e844d382faee771f42196fdf78a1b1a84b80d217b6f0774e566c

Observation e7db3650-8a75-4b03-ae0d-ae885cb915b7 · inbound

Exploring the Alignment of Generation and Understanding in Protein Structure Modeling cites this paper.

Exploring the Alignment of Generation and Understanding in Protein Structure Modeling Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 25

Resolution
unresolved
no resolver link, observed 2026-08-02T05:05:22.747178Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-02T05:05:22.747178Z digest=sha256:7b7cde3c373ebbc2f8e1d03989a061f7f9dc293212d1aa02297ad6c88eb11b9d

Observation 0d175fcc-8ee8-4e45-9945-9d7fab519234 · inbound

SE(3)-MeanFlow: Few-Step Protein Backbone Generation on Lie Groups cites this paper.

SE(3)-MeanFlow: Few-Step Protein Backbone Generation on Lie Groups Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 38

Resolution
unresolved
no resolver link, observed 2026-07-31T01:10:07.354761Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-07-31T01:10:07.354761Z digest=sha256:eebe8975fb8a1bbc5caa2d425fc37c165749e6910049658d3caec06c093d9717

Observation 560ed2b3-c499-4958-99ab-0cbddd83d6be · inbound

SE(3)-MeanFlow: Few-Step Protein Backbone Generation on Lie Groups cites this paper.

SE(3)-MeanFlow: Few-Step Protein Backbone Generation on Lie Groups Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2

Reference 38

Resolution
unresolved
no resolver link, observed 2026-08-03T01:48:11.320233Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-03T01:48:11.320233Z digest=sha256:9050e3da85dd0b81057a05cf269fc8514e67e6334a01b063f55e5089492bf52f