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SELF-BART : A Transformer-based Molecular Representation Model using SELFIES

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arxiv 2410.12348 v1 pith:4NCACQX6 submitted 2024-10-16 cs.CE

classification cs.CE
keywords molecularmodelrepresentationmaterialrepresentationsselfiesanalysisapplications
verification ladder T0 review T1 audit T2 compute T3 formal
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Large-scale molecular representation methods have revolutionized applications in material science, such as drug discovery, chemical modeling, and material design. With the rise of transformers, models now learn representations directly from molecular structures. In this study, we develop an encoder-decoder model based on BART that is capable of leaning molecular representations and generate new molecules. Trained on SELFIES, a robust molecular string representation, our model outperforms existing baselines in downstream tasks, demonstrating its potential in efficient and effective molecular data analysis and manipulation.

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Cited by 3 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. An Encoder-Decoder Foundation Chemical Language Model for Generative Polymer Design

    cond-mat.mtrl-sci 2025-10 conditional novelty 5.0 of 10

    A T5-based polymer language model pre-trained on 100 million hypothetical polymers predicts thermal, electronic, and solubility properties and generates polymers conditioned on a target glass-transition temperature, w...

  2. PolyGraphPy: A unified Python framework for atomistic simulation and machine learning-driven polymer design

    cond-mat.mtrl-sci 2026-06 unverdicted novelty 4.0 of 10

    PolyGraphPy automates DFTB calculations for datasets of monomers and copolymers, uses Bayesian GNNs for property prediction with uncertainty quantification, and applies SELFIES-GPT and BRICS-based GA for de novo polym...

  3. A Survey of AI for Materials Science: Foundation Models, LLM Agents, Datasets, and Tools

    cs.LG 2025-06 unverdicted novelty 4.0 of 10

    This survey organizes foundation models, LLM agents, datasets, and tools in materials science into six task areas.

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