Paper Citation Record · LEDGER

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models

As of 14 August 2026, this Paper Citation Record lists 22 of 22 outbound references and 0 inbound Pith citation observations for arXiv:2412.10347.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.10347 v1

Coverage vector

measured 22 of 22 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-11T15:59:09.728729Z

measured 22 of 22 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-14T06:32:32.682623+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

22 of 22 outbound references displayed

verified exact0
verified fuzzy16
unresolved6
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation a0a2e8a8-d03e-4121-906a-36f899e75bf0 · outbound

This paper cites The quality control (QC) framework includes five levels: QC1, QC2, QC3, QC4 and QC5, where QC1 represents the lowest quality and QC5 the highest.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models The quality control (QC) framework includes five levels: QC1, QC2, QC3, QC4 and QC5, where QC1 represents the lowest quality and QC5 the highest

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.819782Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 21ff1a92-7cc8-4cb2-a522-15df86e02379 · outbound

This paper cites Simulating 500 million years of evolution with a language model.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Simulating 500 million years of evolution with a language model

Reference 6

Resolution: unresolved; no resolver link, observed 2026-08-11T15:59:09.663969Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f6df1f3b-cede-4b9c-80b7-ef57a8ba586c · outbound

This paper cites Bridging biomolecular modalities for knowledge transfer in bio-language models.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Bridging biomolecular modalities for knowledge transfer in bio-language models

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.991571Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation c3e468f9-ca4e-4d4c-9738-19206bef7d0a · outbound

This paper cites BEACON: Benchmark for Comprehensive RNA Tasks and Language Models.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models BEACON: Benchmark for Comprehensive RNA Tasks and Language Models

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-11T15:59:09.679579Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0f9aef3e-bcae-4b21-86e7-520b76d292a4 · outbound

This paper cites Rnabench: A comprehensive library for in silico rna modelling.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Rnabench: A comprehensive library for in silico rna modelling

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.973107Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation ea5d643d-2a7d-4a6e-ae86-e4077903a060 · outbound

This paper cites Saprot: Protein language modeling with structure-aware vocabulary.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Saprot: Protein language modeling with structure-aware vocabulary

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.935033Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation e0aa059e-28a3-4971-957a-efc3c7602a54 · outbound

This paper cites Rnacentral 2021: secondary structure integration, improved sequence search and new member databases.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Rnacentral 2021: secondary structure integration, improved sequence search and new member databases

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.916103Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation d191909e-e7cd-418a-ade7-79f2df0c7f0b · outbound

This paper cites Genomics-fm: Universal foundation model for versatile and data-efficient functional genomic analysis.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Genomics-fm: Universal foundation model for versatile and data-efficient functional genomic analysis

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.883575Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation af3c0a34-bc07-4912-940f-f415675a6342 · outbound

This paper cites DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-11T15:59:09.707242Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9a5c7097-ad44-43bc-8a12-4239093531ad · outbound

This paper cites Cd-gpt: A biological foundation model bridging the gap between molecular sequences through central dogma.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Cd-gpt: A biological foundation model bridging the gap between molecular sequences through central dogma

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.866903Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 1880d801-0155-4869-88a8-696a4b65bbb0 · outbound

This paper cites an unresolved cited work.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Unresolved cited work

Reference 19

Resolution: unresolved; raw_fallback, observed 2026-08-11T15:59:09.850402Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 8082af92-4d71-4e1b-9f36-24b9abf895fb · outbound

This paper cites We set the DNA-protein interface distance threshold to 5 ˚A.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models We set the DNA-protein interface distance threshold to 5 ˚A

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.803260Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 868da3df-78fd-4f75-a76a-3215d68287ec · outbound

This paper cites The nucleotide transformer: Building and evaluating robust foundation models for human genomics.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models The nucleotide transformer: Building and evaluating robust foundation models for human genomics

Reference 1970

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:10.066896Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation ca6e9daf-cec2-4dff-bdad-3d83516f3bbf · outbound

This paper cites Overview of strategies for developing high thermostability industrial enzymes: Discovery, mechanism, modification and challenges.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Overview of strategies for developing high thermostability industrial enzymes: Discovery, mechanism, modification and challenges

Reference 1997

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.899102Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 43376570-ebfe-4e1f-9c29-25ae4b788790 · outbound

This paper cites Interpretable RNA Foundation Model from Unannotated Data for Highly Accurate RNA Structure and Function Predictions.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Interpretable RNA Foundation Model from Unannotated Data for Highly Accurate RNA Structure and Function Predictions

Reference 2012

Resolution: unresolved; no resolver link, observed 2026-08-11T15:59:09.641881Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a9ccd857-8609-4b2a-b83b-45a9bf07607e · outbound

This paper cites Update on activities at the universal protein resource (uniprot) in 2013.Nucleic acids research, 41(D1):D43–D47,.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Update on activities at the universal protein resource (uniprot) in 2013.Nucleic acids research, 41(D1):D43–D47,

Reference 2018

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:10.087871Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 447f509f-fd97-424a-882f-ea5808a47d45 · outbound

This paper cites These reads are grouped based on the randomized regions located upstream of the proximal polyadenylation site (pPAS), forming a dictionary of sequence variants for each library.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models These reads are grouped based on the randomized regions located upstream of the proximal polyadenylation site (pPAS), forming a dictionary of sequence variants for each library

Reference 2019

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:09.836174Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation cbbcaa06-a4e7-4a80-b576-cffef38ee887 · outbound

This paper cites an unresolved cited work.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Unresolved cited work

Reference 2020

Resolution: unresolved; raw_fallback, observed 2026-08-11T15:59:09.953215Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 3db069df-fdca-46cd-ab00-6daa15659e37 · outbound

This paper cites Advancing dna language models: The genomics long-range benchmark.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Advancing dna language models: The genomics long-range benchmark

Reference 2021

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:10.008097Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation be026792-cd09-4ebc-a9ee-49eddf5d149a · outbound

This paper cites Hotprotein: A novel framework for protein thermostability prediction and editing.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Hotprotein: A novel framework for protein thermostability prediction and editing

Reference 2022

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:10.109973Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation fac45c7b-7016-4ff9-8397-d740c3d49d75 · outbound

This paper cites Flip: Benchmark tasks in fitness landscape inference for proteins.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Flip: Benchmark tasks in fitness landscape inference for proteins

Reference 2023

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:10.048936Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation a39b3545-3ecc-4005-a35b-92389f3bf6a3 · outbound

This paper cites Lucaone: Generalized biological foundation model with unified nucleic acid and protein language.

COMET: Benchmark for Comprehensive Biological Multi-omics Evaluation Tasks and Language Models Lucaone: Generalized biological foundation model with unified nucleic acid and protein language

Reference 2024

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:59:10.023033Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Pith citing papers

No inbound Pith citation observations are available.