Paper Citation Record · LEDGER

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs

As of 13 August 2026, this Paper Citation Record lists 46 of 46 outbound references and 1 inbound Pith citation observation for arXiv:2501.01644.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2501.01644 v2

Coverage vector

measured 46 of 46 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-10T22:28:23.804049Z

measured 47 of 47 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-13T06:32:02.005865+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-05-12T04:36:18.378596Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-12T06:06:25.925338Z

Reference resolution

46 of 46 outbound references displayed

verified exact1
verified fuzzy36
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation d00beece-9a65-447f-8868-55abbff93577 · outbound

This paper cites ProteinBERT: a universal deep-learning model of protein se- quence and function.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs ProteinBERT: a universal deep-learning model of protein se- quence and function

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:26.528617Z

Source-reported events for the cited work

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Observation 8196a23e-1928-4192-a73e-2a0a6609c8c7 · outbound

This paper cites Building a knowl- edge graph to enable precision medicine.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Building a knowl- edge graph to enable precision medicine

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:26.512806Z

Source-reported events for the cited work

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Observation a6097e6a-da26-4f11-addd-c9881a7d7905 · outbound

This paper cites Large knowledge model: Perspectives and challenges, 2023.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Large knowledge model: Perspectives and challenges, 2023

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:26.279280Z

Source-reported events for the cited work

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Observation 9c209ecc-febe-42de-b378-51e6cb3dea32 · outbound

This paper cites Bartsmiles: Generative masked language models for molecular representations, 2022.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Bartsmiles: Generative masked language models for molecular representations, 2022

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:26.199279Z

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Observation 434a9ef6-1060-4f20-8745-04852c361c2f · outbound

This paper cites de Almeida, Hassan Sirelkhatim, Guillaume Richard, Marcin Skwark, Karim Beguir, Marie Lopez, and Thomas Pierrot.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs de Almeida, Hassan Sirelkhatim, Guillaume Richard, Marcin Skwark, Karim Beguir, Marie Lopez, and Thomas Pierrot

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:26.181894Z

Source-reported events for the cited work

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Observation d20ed8c7-b8ce-45d5-847d-b05214c34d42 · outbound

This paper cites Bioblp: a modular framework for learning on multimodal biomedical knowledge graphs.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Bioblp: a modular framework for learning on multimodal biomedical knowledge graphs

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:26.165668Z

Source-reported events for the cited work

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Observation b67d1aae-d3c7-4f58-b0c7-e156e650ba54 · outbound

This paper cites BERT: Pre-training of deep bidirectional transformers for language understanding, June 2019.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs BERT: Pre-training of deep bidirectional transformers for language understanding, June 2019

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.986256Z

Source-reported events for the cited work

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Observation 2bb0c319-075b-41ab-bc23-f694c5618fbe · outbound

This paper cites MVGCN: data integration through multi-view graph convolutional network for predicting links in biomedical bipartite networks.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs MVGCN: data integration through multi-view graph convolutional network for predicting links in biomedical bipartite networks

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.920085Z

Source-reported events for the cited work

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Observation 9e6f6225-005a-4c6b-a0b9-c49711562e59 · outbound

This paper cites Dudgeon, Kei-Hoi Cheung, Thomas J.S.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Dudgeon, Kei-Hoi Cheung, Thomas J.S

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.903731Z

Source-reported events for the cited work

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Observation 2bf798a0-1289-4641-a6e2-ccffa59f23ba · outbound

This paper cites Contrastive multi-view representation learning on graphs, 2020.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Contrastive multi-view representation learning on graphs, 2020

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.836557Z

Source-reported events for the cited work

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Observation ac1d2997-a4b3-4fb9-a49f-0d2bbfdcd2c2 · outbound

This paper cites Can language models act as knowledge bases at scale?, 2024.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Can language models act as knowledge bases at scale?, 2024

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.776668Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 23b06c70-8351-4f42-8765-51b11c237e47 · outbound

This paper cites DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.760347Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 4eb86110-b333-43a8-8eea-707aa2d15698 · outbound

This paper cites Instruction-tuned language models are better knowledge learners, 2024.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Instruction-tuned language models are better knowledge learners, 2024

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.719102Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 7bf02d99-7c79-4368-8c70-9838a50a1f8e · outbound

This paper cites Drugbank 6.0: the drugbank knowledgebase for.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Drugbank 6.0: the drugbank knowledgebase for

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.624811Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 1d4b1658-b9c4-4264-9710-f7abb86e0b13 · outbound

This paper cites DrugBank 6.0: The DrugBank knowledgebase for 2024.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs DrugBank 6.0: The DrugBank knowledgebase for 2024

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.544760Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation a866f9f8-2f7e-4824-b434-8437a8e96343 · outbound

This paper cites Otter-Knowledge: benchmarks of multimodal knowledge graph representation learning from different sources for drug discovery.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Otter-Knowledge: benchmarks of multimodal knowledge graph representation learning from different sources for drug discovery

Reference 16

Resolution: verified exact; local_arxiv, observed 2026-08-10T22:28:24.047245Z

Source-reported events for the cited work

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Observation 4d5d5ef1-138b-43ea-803f-7fc8e22fa7cc · outbound

This paper cites Biobert: a pre-trained biomedical language representation model for biomedical text mining.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Biobert: a pre-trained biomedical language representation model for biomedical text mining

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.476671Z

Source-reported events for the cited work

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Observation 7ae62cae-cb3a-481a-8a1a-f40252571746 · outbound

This paper cites Pretrained language models for biomedical and clinical tasks: Understanding and extending the state-of-the-art.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Pretrained language models for biomedical and clinical tasks: Understanding and extending the state-of-the-art

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.459579Z

Source-reported events for the cited work

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Observation ba556884-810f-4d0b-ba30-70f3e9a69e1e · outbound

This paper cites Evolutionary-scale prediction of atomic-level protein structure with a language model.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Evolutionary-scale prediction of atomic-level protein structure with a language model

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.327954Z

Source-reported events for the cited work

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Observation efccbddb-863d-4764-b240-7e8027c28578 · outbound

This paper cites Multi-modal contrastive representation learning for entity alignment, October 2022.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Multi-modal contrastive representation learning for entity alignment, October 2022

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.312567Z

Source-reported events for the cited work

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Observation d9ee5756-4bf9-4da1-9f75-cb70e7de92a1 · outbound

This paper cites En- trez gene: gene-centered information at ncbi.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs En- trez gene: gene-centered information at ncbi

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.296111Z

Source-reported events for the cited work

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Observation 20fecd16-5ca5-4438-85c1-533358af4e5a · outbound

This paper cites Link prediction via matrix factorization.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Link prediction via matrix factorization

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.144606Z

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Observation ecb6069e-8f0e-4568-9229-6155412eb929 · outbound

This paper cites Predicting drug- drug interactions using deep generative models on graphs.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Predicting drug- drug interactions using deep generative models on graphs

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:25.006631Z

Source-reported events for the cited work

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Observation 5617aa6b-9aa5-4264-aa3e-b07fdd432c16 · outbound

This paper cites Nicholson and Casey S.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Nicholson and Casey S

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.894483Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 3cc66975-2df0-4d67-9a0f-464efeaffd25 · outbound

This paper cites Graph Representation Learning via Graphical Mutual Information Maximization, 2020.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Graph Representation Learning via Graphical Mutual Information Maximization, 2020

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.825199Z

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Observation 18089f41-4ec7-400e-89ce-bea9abf1b0b0 · outbound

This paper cites Language Models as Knowledge Bases?.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Language Models as Knowledge Bases?

Reference 26

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Source-reported events for the cited work

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Observation fb0db9ad-22f7-41f7-9cfb-d84ee9d27f50 · outbound

This paper cites Large-scale chemical language repre- sentations capture molecular structure and properties.Nature Machine Intelligence, 4(12):1256–1264, 2022.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Large-scale chemical language repre- sentations capture molecular structure and properties.Nature Machine Intelligence, 4(12):1256–1264, 2022

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.808325Z

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Observation d79ab907-ee37-484f-b2cd-40ecf4920311 · outbound

This paper cites Kipf, Peter Bloem, Rianne van den Berg, Ivan Titov, and Max Welling.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Kipf, Peter Bloem, Rianne van den Berg, Ivan Titov, and Max Welling

Reference 28

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Source-reported events for the cited work

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Observation 95e8ff33-55ea-4c59-8b19-261dcf730f22 · outbound

This paper cites RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Space.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Space

Reference 29

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Observation e845bfcc-99e1-4a1b-8ed2-8ccab0c953d9 · outbound

This paper cites Complex embeddings for simple link predic- tion.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Complex embeddings for simple link predic- tion

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.780134Z

Source-reported events for the cited work

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Observation 54834240-1b58-4d72-b9d5-1bf1ba7bd479 · outbound

This paper cites Gomez, Lukasz Kaiser, and Illia Polosukhin.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Gomez, Lukasz Kaiser, and Illia Polosukhin

Reference 31

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Source-reported events for the cited work

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Observation d90bc47c-f318-4672-99d9-72f648eb4c70 · outbound

This paper cites Hamilton, Pietro Liò, Yoshua Bengio, and R Devon Hjelm.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Hamilton, Pietro Liò, Yoshua Bengio, and R Devon Hjelm

Reference 32

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Observation 90eb26ba-d298-4db9-b1da-bf4a6d6832da · outbound

This paper cites Biokg: A knowl- edge graph for relational learning on biological data.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Biokg: A knowl- edge graph for relational learning on biological data

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.690879Z

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Observation 586b96de-b1d4-4288-a5d3-4808b0c6e9d4 · outbound

This paper cites Pre-trained language models in biomedical domain: A systematic survey.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Pre-trained language models in biomedical domain: A systematic survey

Reference 34

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Observation 1d3f9446-a31b-4bc6-8188-6606ed136e70 · outbound

This paper cites Drug-drug interaction predictions via knowledge graph and text embedding: Instrument validation study.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Drug-drug interaction predictions via knowledge graph and text embedding: Instrument validation study

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.663444Z

Source-reported events for the cited work

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Observation 3f3f39f4-8b16-43d0-8dd1-f96dc99b6f5e · outbound

This paper cites Embedding entities and relations for learning and inference in knowl- edge bases, 2015.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Embedding entities and relations for learning and inference in knowl- edge bases, 2015

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.646652Z

Source-reported events for the cited work

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Observation 149d0e1b-c1ef-4ca1-b068-3a92ef404253 · outbound

This paper cites Knowledge graph contrastive learning for recommendation, 2022.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Knowledge graph contrastive learning for recommendation, 2022

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.551022Z

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Observation 6dd0e2e3-fb1c-4845-9df9-166d7770eec6 · outbound

This paper cites Graphsaint: Graph sampling based inductive learning method, 2020.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Graphsaint: Graph sampling based inductive learning method, 2020

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.422803Z

Source-reported events for the cited work

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Observation a00b3158-ae53-4073-a099-17ac400aca7c · outbound

This paper cites KE-GCL: Knowledge enhanced graph contrastive learning for commonsense question answering, December 2022.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs KE-GCL: Knowledge enhanced graph contrastive learning for commonsense question answering, December 2022

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.406395Z

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Observation c2f10016-9f18-4679-9b1b-0fcb95043db7 · outbound

This paper cites Native: Multi-modal knowledge graph completion in the wild.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Native: Multi-modal knowledge graph completion in the wild

Reference 40

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.362362Z

Source-reported events for the cited work

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Observation d78e9b7e-29b9-4261-8b19-7ca1ba000e5d · outbound

This paper cites Llama beyond english: An empirical study on language capability transfer, 2024.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Llama beyond english: An empirical study on language capability transfer, 2024

Reference 41

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.219606Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation d761bcd2-f501-4a74-beef-082942af056a · outbound

This paper cites an unresolved cited work.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Unresolved cited work

Reference 42

Resolution: unresolved; raw_fallback, observed 2026-08-10T22:28:24.203350Z

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Observation 11d2151e-f658-45d9-a6ea-d300b7faeb0c · outbound

This paper cites Deep graph contrastive representation learning, 2020.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Deep graph contrastive representation learning, 2020

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.185632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Observation 9b0b8318-aeb4-4160-9e3f-9ddb916faca4 · outbound

This paper cites Modeling polypharmacy side effects with graph convolutional networks.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Modeling polypharmacy side effects with graph convolutional networks

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T22:28:24.170160Z

Source-reported events for the cited work

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Observation 39e5d88f-d4d8-4156-9a68-4465f9315a97 · outbound

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Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Unresolved cited work

Reference 2011

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Source-reported events for the cited work

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Observation 18d65fac-8115-472e-8fec-f5e7a8f2dacc · outbound

This paper cites an unresolved cited work.

Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs Unresolved cited work

Reference 2024

Resolution: unresolved; raw_fallback, observed 2026-08-10T22:28:25.607335Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

Pith citing papers

Observation 1e73295c-349c-4b0d-a15e-f366eef63441 · inbound

PrimeKG-CL: A Continual Graph Learning Benchmark on Evolving Biomedical Knowledge Graphs cites this paper.

PrimeKG-CL: A Continual Graph Learning Benchmark on Evolving Biomedical Knowledge Graphs Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs

Reference 25

Resolution: verified exact; arxiv_id, observed 2026-05-12T06:06:25.928831Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.