Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks | Paper Citation Record

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This paper cites Scale-Free Networks: A Decade and Beyond.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Scale-Free Networks: A Decade and Beyond

Reference 1

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This paper cites A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models

Reference 2

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This paper cites An extended gene protein/products boolean network model including post- transcriptional regulation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks An extended gene protein/products boolean network model including post- transcriptional regulation

Reference 3

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This paper cites Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement

Reference 4

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Observation b1f65650-677d-4cdd-83d6-d7a483d6332b · outbound

This paper cites Efficient 6D Vlasov simulation using the dynamical low-rank framework Ensign.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Efficient 6D Vlasov simulation using the dynamical low-rank framework Ensign

Reference 5

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This paper cites Low-rank Tree Tensor Network Operators for Long-Range Pairwise Interactions.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Low-rank Tree Tensor Network Operators for Long-Range Pairwise Interactions

Reference 6

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Observation d9163fae-c1ed-4376-8866-2f6e233e5990 · outbound

This paper cites A parallel rank-adaptive integrator for dynamical low-rank approximation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A parallel rank-adaptive integrator for dynamical low-rank approximation

Reference 7

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This paper cites A rank-adaptive robust integrator for dynamical low-rank approximation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A rank-adaptive robust integrator for dynamical low-rank approximation

Reference 8

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This paper cites An unconventional robust integrator for dynamical low-rank approxima- tion.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks An unconventional robust integrator for dynamical low-rank approxima- tion

Reference 9

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This paper cites Rank-adaptive time integration of tree tensor networks.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Rank-adaptive time integration of tree tensor networks

Reference 10

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Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Time integration of tree tensor networks

Reference 11

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Observation 42e24906-c07e-49eb-a0fa-c543bd6d66df · outbound

This paper cites A parallel Basis Update and Galerkin Integrator for Tree Tensor Networks.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A parallel Basis Update and Galerkin Integrator for Tree Tensor Networks

Reference 12

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Observation 06a30f67-93c1-411d-8c25-3b4735fd96c6 · outbound

This paper cites A robust second-order low-rank BUG integrator based on the midpoint rule.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A robust second-order low-rank BUG integrator based on the midpoint rule

Reference 13

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Observation 0c1575d7-1792-4c61-8186-f0665baf4957 · outbound

This paper cites Efficient dynamical low-rank approximation for the Vlasov-Amp` ere-Fokker- Planck system.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Efficient dynamical low-rank approximation for the Vlasov-Amp` ere-Fokker- Planck system

Reference 14

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This paper cites Robust and conservative dynamical low-rank methods for the Vlasov equation via a novel macro-micro decomposition.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Robust and conservative dynamical low-rank methods for the Vlasov equation via a novel macro-micro decomposition

Reference 15

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Observation 35f51c1d-1a8f-4da1-88d1-90475b1caaf8 · outbound

This paper cites An adaptive solution to the chemical master equation using quantized tensor trains with sliding windows.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks An adaptive solution to the chemical master equation using quantized tensor trains with sliding windows

Reference 16

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This paper cites Simultaneous state-time approximation of the chemical master equation using tensor product formats.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Simultaneous state-time approximation of the chemical master equation using tensor product formats

Reference 17

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This paper cites Accelerating the simulation of kinetic shear Alfv´ en waves with a dynamical low-rank approximation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Accelerating the simulation of kinetic shear Alfv´ en waves with a dynamical low-rank approximation

Reference 18

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This paper cites Asymptotic–preserving and energy stable dynamical low-rank approximation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Asymptotic–preserving and energy stable dynamical low-rank approximation

Reference 19

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This paper cites An asymptotic-preserving dynamical low-rank method for the multi-scale multi-dimensional linear transport equation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks An asymptotic-preserving dynamical low-rank method for the multi-scale multi-dimensional linear transport equation

Reference 20

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Observation 770e2769-3566-46ac-8a5c-c15c924c0705 · outbound

This paper cites An Efficient Dynamical Low-Rank Algorithm for the Boltzmann- BGK Equation Close to the Compressible Viscous Flow Regime.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks An Efficient Dynamical Low-Rank Algorithm for the Boltzmann- BGK Equation Close to the Compressible Viscous Flow Regime

Reference 21

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This paper cites A mass, momentum, and energy conservative dynamical low-rank scheme for the Vlasov equation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A mass, momentum, and energy conservative dynamical low-rank scheme for the Vlasov equation

Reference 22

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Observation 9244745d-6d1a-403a-9cb1-141ae64462e2 · outbound

This paper cites A Low-Rank Projector-Splitting Integrator for the Vlasov-Poisson Equation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A Low-Rank Projector-Splitting Integrator for the Vlasov-Poisson Equation

Reference 23

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Observation b6d98711-70f2-4da3-a6d9-36bb0f382f72 · outbound

This paper cites A hierarchical dynamical low-rank algorithm for the stochastic description of large reaction networks.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A hierarchical dynamical low-rank algorithm for the stochastic description of large reaction networks

Reference 24

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This paper cites A low-rank complexity reduction algorithm for the high-dimensional kinetic chemical master equation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A low-rank complexity reduction algorithm for the high-dimensional kinetic chemical master equation

Reference 25

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This paper cites A low-rank projector-splitting integrator for the Vlasov–Maxwell equations with divergence correction.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A low-rank projector-splitting integrator for the Vlasov–Maxwell equations with divergence correction

Reference 26

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This paper cites A robust and conservative dynamical low-rank algorithm.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A robust and conservative dynamical low-rank algorithm

Reference 27

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Observation 0ed413a9-61d8-4e12-b4a0-456282d14fd8 · outbound

This paper cites Graphviz – Open Source Graph Drawing Tools.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Graphviz – Open Source Graph Drawing Tools

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T21:45:38.077700Z

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Observation 8cc5c18a-904b-48da-a5e2-6a156cc7b566 · outbound

This paper cites Erban and S.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Erban and S

Reference 29

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This paper cites Gardiner.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Gardiner

Reference 30

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This paper cites A general method for numerically simulating the stochastic time evolution of coupled chemical reactions.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

Reference 31

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Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Exact stochastic simulation of coupled chemical reactions

Reference 32

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Observation 333fa976-e2e8-44d6-b9dc-7a2b2058640a · outbound

This paper cites Symbolic Model Checking of Signaling Pathways in Pancreatic Cancer.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Symbolic Model Checking of Signaling Pathways in Pancreatic Cancer

Reference 33

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Observation c6c83dec-52a7-41b2-894f-287d19805de8 · outbound

This paper cites Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision

Reference 34

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correction dated 2013-11-18. Source: crossref record 10.1371/annotation/90e5e4be-952b-42b8-b56d-46baae3479ed->10.1371/journal.pcbi.1003286:correction, observed 2026-07-11T03:05:32.063068+00:00. This notice travels one citation hop only.

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This paper cites Exploring network structure, dynamics, and function using NetworkX.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Exploring network structure, dynamics, and function using NetworkX

Reference 35

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This paper cites On the numerical solution of the chemical master equation with sums of rank one tensors.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks On the numerical solution of the chemical master equation with sums of rank one tensors

Reference 36

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This paper cites Tensor-train approximation of the chemical master equation and its application for parameter inference.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Tensor-train approximation of the chemical master equation and its application for parameter inference

Reference 37

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This paper cites A Dynamical Low-Rank Approach to the Chemical Master Equation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A Dynamical Low-Rank Approach to the Chemical Master Equation

Reference 38

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This paper cites Metabolic Stability and Epigenesis in Randomly Constructed Genetic Nets.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Metabolic Stability and Epigenesis in Randomly Constructed Genetic Nets

Reference 39

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Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Tensor approximation of stationary distributions of chemical reaction networks

Reference 40

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Observation 2069738b-fdcf-4125-9546-b43562d71044 · outbound

This paper cites Direct Solution of the Chemical Master Equation Using Quantized Tensor Trains.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Direct Solution of the Chemical Master Equation Using Quantized Tensor Trains

Reference 41

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This paper cites An efficient heuristic procedure for partitioning graphs.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks An efficient heuristic procedure for partitioning graphs

Reference 42

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Observation 074f388f-91b1-4713-88ab-b59e052a1ed2 · outbound

This paper cites Dynamical Low-Rank Approximation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Dynamical Low-Rank Approximation

Reference 43

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Observation 8cacbe11-177d-47c3-86cb-7f16a33e4a47 · outbound

This paper cites Second-order robust parallel integrators for dynamical low-rank approximation.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Second-order robust parallel integrators for dynamical low-rank approximation

Reference 44

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This paper cites A robust collision source method for rank adaptive dynamical low-rank approximation in radiation therapy.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A robust collision source method for rank adaptive dynamical low-rank approximation in radiation therapy

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-10T21:45:38.026059Z

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Observation 4db8d2a9-7dcc-49a6-a5fb-994b1ab8f207 · outbound

This paper cites A low-rank power iteration scheme for neutron transport critically problems.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A low-rank power iteration scheme for neutron transport critically problems

Reference 46

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Observation 2909c8b2-0bf8-4b0a-bc80-d8151daaa1e9 · outbound

This paper cites Quantitative and logic modelling of molecular and gene networks.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Quantitative and logic modelling of molecular and gene networks

Reference 47

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Observation 8ff35bcf-d8ef-42e8-a9fc-9b0cb4814a8a · outbound

This paper cites A projector-splitting integrator for dynamical low-rank approxima- tion.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A projector-splitting integrator for dynamical low-rank approxima- tion

Reference 48

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This paper cites Time Integration of Rank-Constrained Tucker Tensors.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Time Integration of Rank-Constrained Tucker Tensors

Reference 49

Resolution: verified exact; doi, observed 2026-08-10T21:45:36.300214Z

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Observation a4f0d1ae-cce7-4daa-b6f0-f92d764dd4e3 · outbound

This paper cites Boolean network-based analysis of the apoptosis network: Irreversible apoptosis and stable surviving.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Boolean network-based analysis of the apoptosis network: Irreversible apoptosis and stable surviving

Reference 50

Resolution: verified exact; doi, observed 2026-08-10T21:45:36.287293Z

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Observation 297b08df-f21a-4aab-840f-97830f1a6cc4 · outbound

This paper cites Quantifying Rare Events in Stochastic Reaction-Diffusion Dynamics Using Tensor Networks.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Quantifying Rare Events in Stochastic Reaction-Diffusion Dynamics Using Tensor Networks

Reference 51

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Observation 3ce462a0-e1ce-4171-92d3-cce660a4d1db · outbound

This paper cites A high-order/low-order (HOLO) algorithm for preserving conservation in time-dependent low-rank transport calculations.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A high-order/low-order (HOLO) algorithm for preserving conservation in time-dependent low-rank transport calculations

Reference 52

Resolution: metadata mismatch; raw_fallback, observed 2026-08-10T21:45:37.074601Z

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Observation 0b64a1f9-ce9a-46ca-af8c-8cb534fd3ef2 · outbound

This paper cites A low-rank method for two-dimensional time-dependent radiation transport calculations.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A low-rank method for two-dimensional time-dependent radiation transport calculations

Reference 53

Resolution: malformed identifier; no resolver link, observed 2026-08-10T21:45:36.135453Z

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Observation 370c54bf-7c47-4da1-a917-fb3cf5637c6e · outbound

This paper cites A dynamical low-rank approach to solve the chemical master equation for biological reaction networks.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A dynamical low-rank approach to solve the chemical master equation for biological reaction networks

Reference 54

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Observation 338643cd-595e-4e1e-8bd8-9ea84a076212 · outbound

This paper cites Unsupervised logic-based mechanism inference for network-driven biological processes.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Unsupervised logic-based mechanism inference for network-driven biological processes

Reference 55

Resolution: verified exact; doi, observed 2026-08-10T21:45:36.265331Z

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Observation 19b6cf6e-98e0-4c10-8a80-b641d1081a34 · outbound

This paper cites A Mathematical Theory of Communication.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks A Mathematical Theory of Communication

Reference 56

Resolution: unresolved; no resolver link, observed 2026-08-10T21:45:36.146249Z

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Unavailable: canonical work link unavailable.

Observation 8dd69f7d-a018-4c3a-b104-54784a9dc989 · outbound

This paper cites Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks

Reference 57

Resolution: malformed identifier; no resolver link, observed 2026-08-10T21:45:36.149513Z

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Unavailable: canonical work link unavailable.

Observation 6f48cf4a-eeaf-4918-8a25-4dfc20407482 · outbound

This paper cites Numerical simulation of long-range open quantum many-body dynamics with tree tensor networks.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Numerical simulation of long-range open quantum many-body dynamics with tree tensor networks

Reference 58

Resolution: verified exact; doi, observed 2026-08-10T21:45:36.242595Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation cdd8713c-2ab1-4b77-bb29-c8b0c57df519 · outbound

This paper cites Boolean formalization of genetic control circuits.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Boolean formalization of genetic control circuits

Reference 59

Resolution: unresolved; no resolver link, observed 2026-08-10T21:45:36.157079Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 635c6d19-d140-47c7-9a19-526e8b44c6ef · outbound

This paper cites Regulatory Networks Seen as Asynchronous Automata: A Logical Description.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Regulatory Networks Seen as Asynchronous Automata: A Logical Description

Reference 60

Resolution: unresolved; no resolver link, observed 2026-08-10T21:45:36.160904Z

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Unavailable: canonical work link unavailable.

Observation 9b7d1f0b-c818-4073-b683-b33c34158811 · outbound

This paper cites an unresolved cited work.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Unresolved cited work

Reference 61

Resolution: unresolved; no resolver link, observed 2026-08-10T21:45:36.164924Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 5d7cf068-cef6-4b3e-8681-e28179b70b66 · outbound

This paper cites Boolean modeling in systems biology: an overview of methodology and applications.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Boolean modeling in systems biology: an overview of methodology and applications

Reference 62

Resolution: malformed identifier; no resolver link, observed 2026-08-10T21:45:36.168702Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8d9d813b-f603-4022-afc7-d0e6011c9446 · outbound

This paper cites an unresolved cited work.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Unresolved cited work

Reference 226

Resolution: verified exact; doi, observed 2026-08-10T21:45:36.697285Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-11T06:34:44.6726+00:00.

Observation c4032575-68d5-4e10-a4e5-efda76d4437c · outbound

This paper cites an unresolved cited work.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Unresolved cited work

Reference 413

Resolution: unresolved; no resolver link, observed 2026-08-10T21:45:35.907931Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6092791c-4ee4-4793-906c-e64746b91454 · outbound

This paper cites an unresolved cited work.

Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks Unresolved cited work

Reference 891

Resolution: unresolved; no resolver link, observed 2026-08-10T21:45:36.104745Z

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Unavailable: canonical work link unavailable.

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