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Paper Citation Record · LEDGER

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking

As of 17 August 2026, this Paper Citation Record lists 100 of 126 outbound references and 0 inbound Pith citation observations for arXiv:2502.02371.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2502.02371 v2

Coverage vector

measured 100 of 126 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-09T12:29:03.590276Z

measured 100 of 100 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

100 of 126 outbound references displayed

  • verified exact0
  • verified fuzzy40
  • unresolved60
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 6dc1382c-f517-4ef4-92f5-885cebff8ee1 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 1

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.034442Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.034442Z digest=sha256:c99bd94c176e04125945442a05f7ace5720e1df0c1e369dabb9ab5e09c0c3885

Observation 040c532c-654b-4824-b8ff-143400b29a0a · outbound

This paper cites druggable.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking druggable

Reference 2

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.040408Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.040408Z digest=sha256:61f248cbbf262df7832887cbfba21a64739da19521cf2cd55893975b1e487780

Observation 2c3c0967-2537-45ae-b683-b3342c536bb0 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 3

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.045860Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.045860Z digest=sha256:01a6b5fb8965efbbca041ef60697b3d3c13c5f739c22e68cd3cadd3620e43647

Observation 1eeaeb8a-b60b-49da-a6eb-0ab75b2681ac · outbound

This paper cites A.; Li, Y .; Wu, D.; Li, X.; Li, C.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking A.; Li, Y .; Wu, D.; Li, X.; Li, C

Reference 4

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.051492Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.051492Z digest=sha256:976b44b49a8d68fe82fb506eb6edde167801b7e03d5445127afb01c08f2bbc36

Observation 41ae0544-56f2-41b4-910a-0d51b4378722 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 5

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.056885Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.056885Z digest=sha256:548678397533ccbcac8585afd6993221e8e7a175624823fea83583cdf527b784

Observation f132a464-daff-45ee-9625-06d3e634c44f · outbound

This paper cites Molecular docking: challenges, advances and its use in drug discovery perspective.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Molecular docking: challenges, advances and its use in drug discovery perspective

Reference 6

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.062288Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.062288Z digest=sha256:a567c6d55ad5b81303711793ec66d4b7627a2db8502114bf59188bd4cc2265d5

Observation b2d5bb37-3953-4ff0-b4f2-18d66d7c252f · outbound

This paper cites Docking, virtual high throughput screening and in silico fragment-based drug design.Journal of cellular and molecular medicine 2009,13, 238–248.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Docking, virtual high throughput screening and in silico fragment-based drug design.Journal of cellular and molecular medicine 2009,13, 238–248

Reference 7

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.067859Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.067859Z digest=sha256:e49d1b0c65fbb1729997e597ea34d7ff831fb32f4714cecc6112063a2c416712

Observation 108ebba7-7502-4406-9671-6add73fe6a61 · outbound

This paper cites Structure-based virtual screening for drug discovery: principles, applications and recent advances.Current topics in medicinal chemistry2014,14, 1923–1938.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Structure-based virtual screening for drug discovery: principles, applications and recent advances.Current topics in medicinal chemistry2014,14, 1923–1938

Reference 8

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.073690Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.073690Z digest=sha256:5da4967c748bc3ed90d64beec5b3f2a1fa88335a591998410c6fdeda4e1dbfa9

Observation ed1e8891-ae0f-4b6e-bc0b-c1ad8e4ba74c · outbound

This paper cites L.An introduction to medicinal chemistry; Oxford university press, 2023.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking L.An introduction to medicinal chemistry; Oxford university press, 2023

Reference 9

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.079864Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.079864Z digest=sha256:8d1ae5a3d9fe3aaca80ef0b29f461551954808b4d17af8e75fb9d301bd1a834a

Observation 80e9ef6e-b14a-4625-837f-8bbce0e78a3b · outbound

This paper cites Y .; Al- tuzar, V .; Vivanco-Cid, H.; Mendoza-Barrera, C.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Y .; Al- tuzar, V .; Vivanco-Cid, H.; Mendoza-Barrera, C

Reference 10

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.086297Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.086297Z digest=sha256:2058f9a922d73ef46c3cfd0142c6d4fe810d97278efced6ac8b1afbe5a41b6f9

Observation 3d350b37-4880-42cb-8a4a-24673eb4b42d · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 11

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.096814Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.096814Z digest=sha256:1c859d91fb0426fb01c309507336243f6782b73e794f746e2515241730492beb

Observation 5ea4b164-55b0-496d-b118-725ba963aa3b · outbound

This paper cites F.; Forli, S.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking F.; Forli, S

Reference 12

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.102990Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.102990Z digest=sha256:1857ac750f095cc9ab66f6ea3a64b36617d45ad712e64165971d9d3057987be2

Observation 44522eb4-e7ff-493e-88fe-1668a79ae39c · outbound

This paper cites L.; Cole, J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking L.; Cole, J

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.108750Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.108750Z digest=sha256:9d05eb1b633270d545709dfc997b396a86d20f56406e3cb1bfe2b6fe7b5073a8

Observation 86a542ce-cb34-4465-80ab-5b9ea652e1d8 · outbound

This paper cites A.; Banks, J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking A.; Banks, J

Reference 14

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.115530Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.115530Z digest=sha256:684bd4ddcfddc4a2131fb53d959518b6a237a512502eca096c61af086e34f1e3

Observation 3beec76e-a158-4e1c-a730-be6839c547f3 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 15

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.122176Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.122176Z digest=sha256:b1c4d8f20f65fe9620a64e42a77a7b6ffea457dbbe33c229e8931ac07ee6d446

Observation 12cabb24-7a9a-4479-9c45-d37c21d97710 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 16

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.128776Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.128776Z digest=sha256:d2dfb2e8d544d971e8e68125dec0923bb19efcdf670aa9d2c67ff3b0739fd28f

Observation 4ac8bec2-28ce-4572-bdc9-e8eb4d3e435c · outbound

This paper cites M.; Alhossary, A.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking M.; Alhossary, A

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.134076Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.134076Z digest=sha256:30f3d325ffb4f109d5286d1844af1fc04a025f5851e710461553dd7d46d8056e

Observation b8212f42-727d-4f71-9f99-d389f07ee230 · outbound

This paper cites R.; Baumgartner, M.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking R.; Baumgartner, M

Reference 18

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.138745Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.138745Z digest=sha256:f2767c9e8abaa6d3525efae260cd5b646b39119c09b1e832f73fe1843ddfad09

Observation d0530909-79be-4d98-878d-8f312f34159b · outbound

This paper cites Predicting protein structure from single se- quences.Nature Computational Science2022,2, 775– 776.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Predicting protein structure from single se- quences.Nature Computational Science2022,2, 775– 776

Reference 19

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.143820Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.143820Z digest=sha256:261da7cff2d65adce1147f9aa0277918359e7ee025e56205c07ae961b5760bde

Observation 6412ec1c-0010-44b9-8bf7-aa52bc1cc125 · outbound

This paper cites nature2021,596, 583–589.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking nature2021,596, 583–589

Reference 20

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.148081Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.148081Z digest=sha256:1c139b3e5ebabdafac11947d09124f2c4fd90a92a661a4638ce3bde8a87742c5

Observation dd2c4831-0f0f-447f-ad9f-862d31153337 · outbound

This paper cites ColabFold: making protein folding accessible to all.Nature methods2022, 19, 679–682.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking ColabFold: making protein folding accessible to all.Nature methods2022, 19, 679–682

Reference 21

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.152564Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.152564Z digest=sha256:c931786934bfbdb3437bf86f849bd1acd29e8e779dc5dc4bd19688dd59e07ac0

Observation 9012bb5d-0aaa-4611-9110-aab4ff852463 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 22

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.157602Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.157602Z digest=sha256:e0e6a6c2386d62a954bc6c276c258632a918e39df3c56fc4eeafd4ade4fc3d78

Observation 02097b08-020a-4c95-a46f-f0f88012d5c1 · outbound

This paper cites R.; Wang, J.; Cong, Q.; Kinch, L.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking R.; Wang, J.; Cong, Q.; Kinch, L

Reference 23

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.163617Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.163617Z digest=sha256:fce7d9904b485e770233af98a398caf2b2a28eede3db6758b5e54cd12162aedf

Observation 037368d5-b879-4d25-93c0-8881d223d24f · outbound

This paper cites P.; Al-Lazikani, B.; Hopkins, A.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking P.; Al-Lazikani, B.; Hopkins, A

Reference 24

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.169336Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.169336Z digest=sha256:d3c61d61caa65ac132434ed1a24f9c09c1f5fa7e1d938c176c3f9297e5d5aba8

Observation ece0f697-1d30-42bb-826d-84cacbd18cc8 · outbound

This paper cites P.; Donadi, R.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking P.; Donadi, R

Reference 25

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.174721Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.174721Z digest=sha256:96962dde527ef4cbee79699393d81547519d7de83834b39717bebbc2430eed27

Observation 541de415-b148-4882-9ea7-41f86607eb33 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 26

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.180298Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.180298Z digest=sha256:12fc2626816dfb36bb5970d446e2f9fdfa087a7596e9b3f8dbb4d93a803026d2

Observation 4f60b59d-0567-4b8d-a718-8136fcadbf61 · outbound

This paper cites S.; Barton, G.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking S.; Barton, G

Reference 27

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.185709Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.185709Z digest=sha256:7ab7214f75a525b8e7fdefe6cc714fc289ddb62420c8c41aa769acf09d7b26b5

Observation d9813dbb-8cf9-4144-ac08-2b90e7a621e6 · outbound

This paper cites DiffBindFR: an SE(3) equivariant network for flexible protein-ligand docking.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking DiffBindFR: an SE(3) equivariant network for flexible protein-ligand docking

Reference 28

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.197064Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.197064Z digest=sha256:4a18bf814d746d5334039d2a87a02dc893978a5290c85f41dbc5bcaa7a44e6ad

Observation 8e78ff71-a550-4423-a1fc-9b58e4066a83 · outbound

This paper cites M.; Deane, C.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking M.; Deane, C

Reference 29

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.203127Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.203127Z digest=sha256:87179bd5ba4a8a40d761bd0bf285f0aabb611f29282ef0474320b9d20b7f3cbf

Observation f24b68c1-a36b-4223-84f9-1a526bf18bfb · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 30

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.208496Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.208496Z digest=sha256:6efcadd998f88eb8bc16670c9738bf9f09a7c1e89f375a8020caa7397b6f2e15

Observation 1d1ea6fa-5ecd-4bea-ba2c-b4c9492d4e2f · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 31

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.215823Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.215823Z digest=sha256:d50cbe1dc2ddcb1240736b448be7499c15edf58a8f25859d2038ae93f9e11e93

Observation e1aa0e54-a57c-492f-9e43-17f9aebb28a4 · outbound

This paper cites Deep Learning for Protein-Ligand Docking: Are We There Yet? ICML AI4Science Workshop.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Deep Learning for Protein-Ligand Docking: Are We There Yet? ICML AI4Science Workshop

Reference 32

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.221777Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.221777Z digest=sha256:095bc0e8df3aa4da5d47619f9baf005eaddcdfa6f1841cf5a0cc5aa986181a1b

Observation 11d97ce4-b65d-4589-b5ef-ecaea2875a78 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 33

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.227505Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.227505Z digest=sha256:900a56bf74ed32dffef5d935c04b72ddeeadf2f36183becc7f86f6d1dc9d7921

Observation 39abcddd-dcb0-4dc0-9efd-17347e9deebc · outbound

This paper cites J.; Verdonk, M.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking J.; Verdonk, M

Reference 34

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.233001Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.233001Z digest=sha256:910996dc08e57882bbdbc4350384449dafd87b6f0c0874ae8bd127ee17333066

Observation 5b185134-5467-4e20-8637-510a03df0e03 · outbound

This paper cites COFACTOR: An Accu- rate Comparative Algorithm for Structure-Based Protein Function Annotation.Nucleic Acids Res.2012,40, W471–W477.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking COFACTOR: An Accu- rate Comparative Algorithm for Structure-Based Protein Function Annotation.Nucleic Acids Res.2012,40, W471–W477

Reference 35

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.238400Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.238400Z digest=sha256:02fa24864df487fe1bcc8f1ae693aa7ea884066accb217c39b8bb625b0a75a4c

Observation 51b5e462-a034-4df8-abad-a2fdf9dea67a · outbound

This paper cites LIGSITE csc: predicting ligand binding sites using the Connolly surface and degree of conservation.BMC Structural Biology2006, 6, 1–11.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking LIGSITE csc: predicting ligand binding sites using the Connolly surface and degree of conservation.BMC Structural Biology2006, 6, 1–11

Reference 36

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.244282Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.244282Z digest=sha256:6fd119ccc9cab5b90898ca4d169843da57a9956ac262f985701848cb3c2ef6e7

Observation 3c91afd1-5255-458d-9aea-f31037ebd52b · outbound

This paper cites Fpocket: An Open Source Platform for Ligand Pocket Detection.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Fpocket: An Open Source Platform for Ligand Pocket Detection

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.249054Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.249054Z digest=sha256:105fd140f5e37045037ebe7284b40337275f9eefa651f787cafe560ddf18835f

Observation 4f1f6045-f044-4c48-8177-cf6f25713565 · outbound

This paper cites LIGSITE: Automatic and Efficient Detection of Potential Small Molecule-Binding Sites in Proteins.J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking LIGSITE: Automatic and Efficient Detection of Potential Small Molecule-Binding Sites in Proteins.J

Reference 38

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.254064Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.254064Z digest=sha256:5020cd067b63d42bc08b9625eb83811a5d25324dddc81f2054f7d68c73245911

Observation 2c18825e-a7a3-4125-8325-baed2ac439b7 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 39

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.259056Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.259056Z digest=sha256:21cbb5050173c5b76b27ee9a00b7db79b8a68ffbe9b9a0959d21b37b2429773c

Observation 143ea62b-7e53-422a-854b-a53fe2fdc245 · outbound

This paper cites G.; Banaszak, L.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking G.; Banaszak, L

Reference 40

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.264010Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.264010Z digest=sha256:3e60cdda3ec0634a4dc4bb470b2864d6d2746f080a198b765d09ab211cc328b4

Observation bcec8447-779e-4c0b-b53b-9aa5ff6f5abc · outbound

This paper cites J.; Jones, T.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking J.; Jones, T

Reference 41

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.269726Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.269726Z digest=sha256:1d7b6b919f14f788eb217b32ad6835291b9d31745edf2e411533bc42152fe406

Observation 7927bfd5-77de-4e5b-91c4-6e65aa2dcd21 · outbound

This paper cites Anatomy of Protein Pockets and Cavities: Measurement of Binding Site Geometry and Implications for Ligand Design.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Anatomy of Protein Pockets and Cavities: Measurement of Binding Site Geometry and Implications for Ligand Design

Reference 42

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.274736Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.274736Z digest=sha256:529fa9aba55b5ea4d8f716a0c4ba3f0a2491e7987a2d3500f88d19c2c13681cc

Observation 7a61fa6a-e626-47cb-9d48-77a18dc22179 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 43

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.280599Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.280599Z digest=sha256:47acc66b9af58951143c81c9ac8989a1a59757be6ec8fb11445a0c2f3e69f993

Observation d704f1e6-ddd8-4055-a18b-d9e7724fbf04 · outbound

This paper cites PocketPicker: Analysis of Ligand Binding-Sites with Shape Descrip- tors.Chem.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking PocketPicker: Analysis of Ligand Binding-Sites with Shape Descrip- tors.Chem

Reference 44

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.286159Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.286159Z digest=sha256:71346c745250e42762e68f2ee9383ba2acb1b12a24ff183905fa3ec4458201d7

Observation 22d61623-5a2b-4016-9bd3-c641c20ae32d · outbound

This paper cites Pocketome via Com- prehensive Identification and Classification of Ligand Binding Envelopes.Mol.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Pocketome via Com- prehensive Identification and Classification of Ligand Binding Envelopes.Mol

Reference 45

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.291520Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.291520Z digest=sha256:a2bb0608d5eb012e7bb553cedcea3ba2c7ad9f880822f18ac519cc2bdd94b60f

Observation 9a5d1904-80c1-4605-83ed-e141d4b30c78 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 46

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.296883Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.296883Z digest=sha256:147765fa86c312d1c0e912cc4efd9b3f981d58366c708da8792cdc5d6bed2f26

Observation f166ebfe-dd83-4fc5-b9ae-4b10157f91b1 · outbound

This paper cites Druggable.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Druggable

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.420067Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.304035Z digest=sha256:cc42a0da252c8fee291b182b1f22acadf4ea69d8d72173e7321cb77106e84ea4

Observation 2c5db42d-98e6-4fa2-97f8-015b09f41c79 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 48

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:05.392523Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.310788Z digest=sha256:7cd6cbda89efa3e5ae20fcc3b26a61f676d096f9a4af4dbc677ea87a79528db5

Observation e52efdc4-9018-498b-a9a5-5dc6128a0da5 · outbound

This paper cites EasyMIFS and SiteHound: A Toolkit for the Identification of Ligand-Binding Sites in Protein Structures.Bioinformatics2009,25, 3185– 3186.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking EasyMIFS and SiteHound: A Toolkit for the Identification of Ligand-Binding Sites in Protein Structures.Bioinformatics2009,25, 3185– 3186

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.366549Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.316183Z digest=sha256:d09b0f62a1f51d7fb501158fa253dd4238efe3db9f1427bfbba298b994fe2dda

Observation 6aef3b2c-661e-46ee-ac8c-ed921c37e584 · outbound

This paper cites E.; Beglov, D.; Villar, E.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking E.; Beglov, D.; Villar, E

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.347545Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.321458Z digest=sha256:0f3c4878797a640d93704cbefe02e481f795ce6c72393158062143c9b4cadf38

Observation ae506a8b-1a40-42d5-9836-a85d07de2f55 · outbound

This paper cites ConSurf: An Algo- rithmic Tool for the Identification of Functional Regions in Proteins by Surface Mapping of Phylogenetic Infor- mation.J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking ConSurf: An Algo- rithmic Tool for the Identification of Functional Regions in Proteins by Surface Mapping of Phylogenetic Infor- mation.J

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.327414Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.326865Z digest=sha256:714886b7918f1523dab5cea589bd187de58c25809bd3b1a5647b4d06c50464f1

Observation 9fda2945-1c5a-4159-8a01-0d4b405b49c4 · outbound

This paper cites E.; Mayrose, I.; Glaser, F.; Ben- Tal, N.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking E.; Mayrose, I.; Glaser, F.; Ben- Tal, N

Reference 52

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.307952Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.331887Z digest=sha256:adbb1f57fc9b6dd1143a473b187d550ab56209d4d61b3747f3bdfc9682b20375

Observation ba8cc2c2-1307-4aed-bdeb-43cd20d56d62 · outbound

This paper cites Ligand-Binding Site Pre- diction Using Ligand-Interacting and Binding Site- Enriched Protein Triangles.Bioinformatics2012,28, 1579–1585.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Ligand-Binding Site Pre- diction Using Ligand-Interacting and Binding Site- Enriched Protein Triangles.Bioinformatics2012,28, 1579–1585

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.285375Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.336668Z digest=sha256:4ec4117d0295d1e14fee96e966211bda1f1228a945195d14d9eda776717091ff

Observation 9b1adb1b-e170-4612-a234-ef26b097dc2b · outbound

This paper cites J.; Barton, G.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking J.; Barton, G

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.262545Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.341622Z digest=sha256:a87f46a062fda347c543299d1e82501e344f8531ddf683136f1da2443a4974f3

Observation af9d6e30-1024-412e-ae54-ec350c7bbdf3 · outbound

This paper cites N.; Kelley, L.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking N.; Kelley, L

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.239713Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.346816Z digest=sha256:cb3464fb744ea449a3f1291436766efbeca847cce49630fdfc063ea7394d24a1

Observation 30d58926-7198-4740-b21c-54ad5eeff24c · outbound

This paper cites Protein–Ligand Bind- ing Site Recognition Using Complementary Binding- Specific Substructure Comparison and Sequence Profile Alignment.Bioinformatics2013,29, 2588–2595.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Protein–Ligand Bind- ing Site Recognition Using Complementary Binding- Specific Substructure Comparison and Sequence Profile Alignment.Bioinformatics2013,29, 2588–2595

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.196956Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.351809Z digest=sha256:18d3a9a787851bc03b81536ff4983fd9bed2628525cb50706ac06098a3634041

Observation 4b1ee70e-2dc3-439d-bcbf-08e5a247dfff · outbound

This paper cites Ligand Binding Site Detection by Local Structure Alignment and Its Performance Com- plementarity.J.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Ligand Binding Site Detection by Local Structure Alignment and Its Performance Com- plementarity.J

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.173276Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.356298Z digest=sha256:7596dfe041a52bc4b64ce98824991fdf4d1a67fe0ddad77c1fc1786b015d7913

Observation 0c8f9ba6-ebf5-42f9-b89b-37845764c537 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 58

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:05.142260Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.361009Z digest=sha256:4e7773042e59ce7c7d9e9eb6ad6cf017adc4c8962d2c1d6defbdd37179eb0f6d

Observation a10c59a0-3ae1-4d07-a316-da0a36303877 · outbound

This paper cites E.; Bechor- Shental, D.; Martz, E.; Ben-Tal, N.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking E.; Bechor- Shental, D.; Martz, E.; Ben-Tal, N

Reference 59

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.116632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.366611Z digest=sha256:f8344ae7e249151e8547058eee6751ad68f05380e3aa2c5a0b6473964bb87b50

Observation ef862757-4822-4cd6-81e8-813a52946e3e · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 60

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:05.087551Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.371474Z digest=sha256:0128731fcde39f18354104e227747d2128f39b6d420f0df5f299c5b44c790b57

Observation 8f374d8f-6153-4b15-9a96-3476b4ab58b2 · outbound

This paper cites A.; Laskowski, R.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking A.; Laskowski, R

Reference 61

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.067326Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.376363Z digest=sha256:e0e54b5bdf59221c8fbfdee624f0396a80e8647c0b1d01cb3f3c9c6daf8cae9d

Observation ea7a6d47-5b2d-4375-ae36-f9298fea4c62 · outbound

This paper cites MetaPocket: A Meta Approach to Improve Protein Ligand Binding Site Prediction.OMICS2009, 13, 325–330.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking MetaPocket: A Meta Approach to Improve Protein Ligand Binding Site Prediction.OMICS2009, 13, 325–330

Reference 62

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.042387Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.381360Z digest=sha256:f0b82f4ee54e69b029dadfada5c87c9460a51a3f6760ff636eef1a3583a89c61

Observation 4cac8924-3815-4af8-b7ff-33624c9063ab · outbound

This paper cites D.; Blundell, T.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking D.; Blundell, T

Reference 63

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:05.018287Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.387080Z digest=sha256:e567977531e9d90ca5924dab7a6f830f5c7ef4fe6f8aee677f9f79c8bbb16f2e

Observation 01474845-5f1e-4bb0-ac6f-2c5894a5ea43 · outbound

This paper cites FINDSITE: A Threading- Based Approach to Ligand Homology Modeling.PLoS Comput.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking FINDSITE: A Threading- Based Approach to Ligand Homology Modeling.PLoS Comput

Reference 64

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.991446Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.392997Z digest=sha256:4c809bff95806e3eb6b578daa45805de48417090ff4da9380ee392e2ab0131e9

Observation f3b45d75-1ebb-4b02-ae6e-7f657d1df1b3 · outbound

This paper cites Science2020,368, 1499–1504.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Science2020,368, 1499–1504

Reference 65

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.972171Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.398470Z digest=sha256:43d5d2362b78f1e5c3af64890a1bb03d04b231f8550be4fa1998f5bb338d2096

Observation 0f648427-ec34-47dd-8407-c5474af8267a · outbound

This paper cites R.; Studer, G.; Tauriello, G.; Water- house, A.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking R.; Studer, G.; Tauriello, G.; Water- house, A

Reference 66

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.953381Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.405232Z digest=sha256:b040a319d28c236afaf2e8650e81e63fe28cd0f579bd08c6bf3579464665a121

Observation 48e7c0db-00d0-4b69-b982-7f327639fb10 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 67

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.936012Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.410909Z digest=sha256:2e58c14dd78bfd0c297ab308f85679add7bb88b13c50cdb38614a40c2f698d64

Observation b40e6d35-b14a-452a-81ba-bde747e28498 · outbound

This paper cites VN-EGNN: E(3)-Equivariant Graph Neural Networks with Virtual Nodes Enhance Protein Binding Site Identification.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking VN-EGNN: E(3)-Equivariant Graph Neural Networks with Virtual Nodes Enhance Protein Binding Site Identification

Reference 68

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.417435Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.417435Z digest=sha256:fbd7ed4d18630e864bcccdda225583b703ad2a00a4662d006b4fb4af5cb3a487

Observation e0c7ff9b-0aa8-4e88-bf3a-210201f5f7b7 · outbound

This paper cites P.; Tiwary, P.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking P.; Tiwary, P

Reference 69

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.918862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.424413Z digest=sha256:14cf31df4a0068a042567190c81ff05aebd54aefa1653ee669dd3c0e905e2429

Observation f5e6ee43-493e-4d8e-ad0f-52eadd8f0800 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 70

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.898828Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.429671Z digest=sha256:b96b157fd07436d2e5c17e5cc41fc4a494ed6cf0bdd1f903bff8849239a7769d

Observation 0dd8dc43-a658-47f5-b82d-149a1d87b67e · outbound

This paper cites M.; Zielenkiewicz, P.; Siedlecki, P.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking M.; Zielenkiewicz, P.; Siedlecki, P

Reference 71

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.880150Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.434681Z digest=sha256:9b5850f3262f11bc7fad971bcfb27395fcc97604aee1692937c69d916cdc4791

Observation d470863d-a874-445a-b379-e6d5c3572f7f · outbound

This paper cites Improving protein-ligand bind- ing site prediction accuracy by classification of inner pocket points using local features.Journal of chemin- formatics2015,7, 1–13.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Improving protein-ligand bind- ing site prediction accuracy by classification of inner pocket points using local features.Journal of chemin- formatics2015,7, 1–13

Reference 72

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.862934Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.439722Z digest=sha256:b00b8741d743364ca1cd45ee034bbfa02fe16622fc07f5b3e8eb1b564f91eb1a

Observation deb869a6-bf78-4406-adc0-27d8e2c08eac · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 73

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.844095Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.444537Z digest=sha256:ef011c4095e973ef3de9a269a8054301b7684d6f5aaf79e71a45f2f476e242d7

Observation 6c0bddab-5ff4-4917-89ab-7baada7cee21 · outbound

This paper cites Fpocket: an open source platform for ligand pocket detection.BMC bioinformatics2009,10, 1–11.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Fpocket: an open source platform for ligand pocket detection.BMC bioinformatics2009,10, 1–11

Reference 74

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.826939Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.450284Z digest=sha256:5dfd5ed1c57bc64e706d30bcef008130877add107f18c53453fd06295288d4d3

Observation a188972d-badb-4011-9021-e18b044ff626 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 75

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.809099Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.455476Z digest=sha256:26384ca61e7d5d85a122b6a9b5c3417b7f26d53cba3301920ba597b4d52f805b

Observation ebb48136-428a-4fe2-85cc-c33a07c01767 · outbound

This paper cites PGBind: pocket-guided explicit attention learning for protein– ligand docking.Briefings in Bioinformatics2024,25, bbae455.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking PGBind: pocket-guided explicit attention learning for protein– ligand docking.Briefings in Bioinformatics2024,25, bbae455

Reference 76

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.790349Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.460548Z digest=sha256:eb05dc571ac5c290705990c4a8bbf35ae61ac6bf460a2045905107fef7c7891c

Observation f7eb94f2-d5da-4c22-8651-7e5405fd5860 · outbound

This paper cites U-Net: Convolutional Networks for Biomedical Image Segmentation.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking U-Net: Convolutional Networks for Biomedical Image Segmentation

Reference 77

Resolution
unresolved
no resolver link, observed 2026-08-09T12:29:03.465745Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-09T12:29:03.465745Z digest=sha256:5fbc8948d0baade0e09b22486c35387ad55b2c2640154ef44c1a64c393c82a07

Observation 2f7c0c17-1245-46d3-a060-1bc93bc21ecd · outbound

This paper cites Deep residual learning for image recognition.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Deep residual learning for image recognition

Reference 78

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.773492Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.471260Z digest=sha256:020fcdb097f16981f8bde419f4cc78bbe9a859cc722a9cd161a2d7c78ecf53ac

Observation 8f6f6693-b2fc-4e07-a82e-bd53c58168d4 · outbound

This paper cites Squeeze-and-excitation net- works.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Squeeze-and-excitation net- works

Reference 79

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.756783Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.476205Z digest=sha256:6a4758c8cd9b773b7813069ac95200b6d78bcf8983f58ea527b3dcc9f06cdc32

Observation 64c88dd9-28b3-4521-93a6-5d0ca4f7bb19 · outbound

This paper cites Breast cancer histopathological image classification using convolu- tional neural networks with small SE-ResNet module.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Breast cancer histopathological image classification using convolu- tional neural networks with small SE-ResNet module

Reference 80

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.739748Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.481394Z digest=sha256:e4e97d03f6b20e70ee6c10ed9e2429b3f32b8b692addebb8c96fd0efdb3af3fa

Observation 9bc21b49-6854-4356-b34d-b29e776a0ba7 · outbound

This paper cites Enhancing Open-World Bacterial Raman Spectra Identification by Feature Regularization for Im- proved Resilience against Unknown Classes.Chemical & Biomedical Imaging2024,2, 442–452.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Enhancing Open-World Bacterial Raman Spectra Identification by Feature Regularization for Im- proved Resilience against Unknown Classes.Chemical & Biomedical Imaging2024,2, 442–452

Reference 81

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.722731Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.486454Z digest=sha256:2bbbc40cb158b147ff8f63041043d73adb35f3bed3d8dc0211a225cd520b6562

Observation b5984a72-e2b6-4e0e-88fc-a9f6f4b8da4d · outbound

This paper cites sc- PDB: a 3D-database of ligandable binding sites—10 years on.Nucleic Acids Research2015,43, D399– D404.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking sc- PDB: a 3D-database of ligandable binding sites—10 years on.Nucleic Acids Research2015,43, D399– D404

Reference 82

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.703828Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.491437Z digest=sha256:306058f3edf8bda607912529a89961ec2acb1642c58237045b01b36565d902f5

Observation 598c2765-9f53-4f26-8d24-6f53849e08cc · outbound

This paper cites Comparison and druggability prediction of protein–ligand binding sites from pharmacophore- annotated cavity shapes.Journal of Chemical Informa- tion and Modeling2012,52, 2287–2299.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Comparison and druggability prediction of protein–ligand binding sites from pharmacophore- annotated cavity shapes.Journal of Chemical Informa- tion and Modeling2012,52, 2287–2299

Reference 83

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.684443Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.496813Z digest=sha256:6b94c4d9eb9bcfab5ba625cf78eed363585bbd6188a320a64a4bed7ce7cb99a3

Observation e8d99038-da74-4659-8ce1-7b5e7e29bc28 · outbound

This paper cites How to measure the similarity between protein ligand-binding sites?Current Computer-Aided Drug Design2008,4, 209.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking How to measure the similarity between protein ligand-binding sites?Current Computer-Aided Drug Design2008,4, 209

Reference 84

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.664097Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.503389Z digest=sha256:5a1324b036abe33c54592cc8018f299aeee0db327c166bd1359460ff5e7ae2db

Observation 78ee5418-23ae-4bd3-ace3-405e6575663c · outbound

This paper cites Why is Tanimoto index an appropriate choice for fingerprint-based sim- ilarity calculations?Journal of Cheminformatics2015, 7, 1–13.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Why is Tanimoto index an appropriate choice for fingerprint-based sim- ilarity calculations?Journal of Cheminformatics2015, 7, 1–13

Reference 85

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.647535Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.508526Z digest=sha256:0a19a1fb0de4748e41709fc4b0257820f08384864240bd1e941e02b66f5ca799

Observation c8f83229-2f98-4cdd-8b48-06a37d1dddc4 · outbound

This paper cites https://github.com/ gnina/tfbio, 2018; Accessed: YYYY-MM-DD.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking https://github.com/ gnina/tfbio, 2018; Accessed: YYYY-MM-DD

Reference 86

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.629462Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.514049Z digest=sha256:a232b27990cb70e1e052dfb2e742f34fb883a091e36edc776a6dc1610ecc7e14

Observation 5a3ea54a-d58d-4cb4-99c2-7ace9542a986 · outbound

This paper cites SoftSeg: Advan- tages of soft versus binary training for image segmen- tation.Medical Image Analysis2021,71, 102038.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking SoftSeg: Advan- tages of soft versus binary training for image segmen- tation.Medical Image Analysis2021,71, 102038

Reference 87

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.612030Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.520350Z digest=sha256:6445ec58dd791a0c7d1878823180641ea31abb49f47640667eae266d688e16c5

Observation f4c7b807-21fd-48c8-bd2a-b0865071576a · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 88

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.590394Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.525736Z digest=sha256:ecebc5b5d87f6fb456365400f0e274a795034045b8ecb1ba0327312f82bee74c

Observation adbd67bc-abeb-48a0-aa7e-964f87939aff · outbound

This paper cites V-net: Fully convolutional neural networks for volumetric medical image segmentation.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking V-net: Fully convolutional neural networks for volumetric medical image segmentation

Reference 89

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.571269Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.531678Z digest=sha256:a2b87932ba0100ce9239c89920e7884df08bd6562216df4a9c35392fa4ab9be1

Observation 1f610957-0da1-454b-980d-f396b626be4a · outbound

This paper cites Focal Loss for Dense Object Detection.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Focal Loss for Dense Object Detection

Reference 90

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.554152Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.536632Z digest=sha256:84f8a8963c29b0a09f063de54501e7e4abda06e628e88dab57f0dd7986d13ead

Observation f3509954-5713-4e0b-b572-686053b0c13f · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 91

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.537580Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.541670Z digest=sha256:0dc3f926c40a71bc62ebff3767b6b53b91080f3e24de96a2885aaa898d1f60a9

Observation 4cf88831-e2de-431f-8414-16c2ac16cddc · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 92

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.518513Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.546470Z digest=sha256:759d9722829484b8f98a6eb038c6bc7d4f7e3ef659e2d1a8d9aea0643994c36e

Observation fdd5db03-e4c0-49ef-82ab-cc72512b5f09 · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 93

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.494151Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.552759Z digest=sha256:590394d0c5b463419c03144ed9249bd1003f4d37461cb28b64ab5ac75a71d964

Observation 27dffbc8-00c1-435d-bbd1-3d6d9673173c · outbound

This paper cites Al- phaFold Protein Structure Database: massively expand- ing the structural coverage of protein-sequence space with high-accuracy models.Nucleic Acids Research 2022,50, D439–D444.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Al- phaFold Protein Structure Database: massively expand- ing the structural coverage of protein-sequence space with high-accuracy models.Nucleic Acids Research 2022,50, D439–D444

Reference 94

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.474405Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.559665Z digest=sha256:f07af16a60e7bc3edf8e4a55e5596b423e6ab2b530f1dc4d3febcf6f9d13d6ad

Observation 6667ab55-fc91-4b5f-9c3d-75d9961d4f15 · outbound

This paper cites Rdkit documentation.Release2013,1, 4.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Rdkit documentation.Release2013,1, 4

Reference 95

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.452874Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.565574Z digest=sha256:df1515dd435899b751a90e2b609aeca605a317f8370e547c35f67d56042f96ea

Observation 55a87180-1c10-44b2-b73a-479dc11c3aa8 · outbound

This paper cites Comparative assessment of scoring functions: the CASF-2016 update.Journal of chemical information and modeling2018,59, 895–913.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Comparative assessment of scoring functions: the CASF-2016 update.Journal of chemical information and modeling2018,59, 895–913

Reference 96

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.434282Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.570567Z digest=sha256:a6eb994524c98937ab8c64aaa9df0e4e1c82ed4651629666c07e3c8d26105ca2

Observation dcbf7972-e499-42cc-b58e-911bc8d5655a · outbound

This paper cites DELPHI Scorer: A Machine-Learning-Based Scoring Function for Protein- Ligand Interactions.Journal of Chemical Information and Modeling2017,57, 47–55.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking DELPHI Scorer: A Machine-Learning-Based Scoring Function for Protein- Ligand Interactions.Journal of Chemical Information and Modeling2017,57, 47–55

Reference 97

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.415173Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.575696Z digest=sha256:1f1a2af7d4e506660b0eb541d93991c3e17d7c888cad8ca73cc6cb719f1ba90c

Observation e5624148-cb27-4e37-8bd2-9f141cb2deeb · outbound

This paper cites Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer

Reference 98

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.396165Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.580373Z digest=sha256:f90225e2921fc1555eda338ed5ec0db0ae8e1a92b3a6adfe214f7e32b5268d0f

Observation 7ce6f1aa-61a7-4984-8027-74f0156064bf · outbound

This paper cites L.; Kubra, B.; Sharaf, M.; Emwas, A.-H.; Jaremko, M.; Abdalla, M.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking L.; Kubra, B.; Sharaf, M.; Emwas, A.-H.; Jaremko, M.; Abdalla, M

Reference 99

Resolution
verified fuzzy
raw_fallback, observed 2026-08-09T12:29:04.374999Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.585117Z digest=sha256:536483c313fee2a39aacc81aae19e7526e63ebb881c2d61e54207cfac6271b19

Observation 39fbfc9e-219d-43d5-8752-f5e984b30e1e · outbound

This paper cites an unresolved cited work.

RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking Unresolved cited work

Reference 100

Resolution
unresolved
raw_fallback, observed 2026-08-09T12:29:04.356568Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-17T06:30:58.91139+00:00.

source=pdf_text observed=2026-08-09T12:29:03.590276Z digest=sha256:2c44469155ec6dc677528dd598aabda1cbf60f355bf91cd6eb47ecee9e74bd4a

Pith citing papers

No inbound Pith citation observations are available.