ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization | Paper Citation Record

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This paper cites write newline.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization write newline

Reference 1

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This paper cites Mol GPT : Molecular generation using a transformer-decoder model.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Mol GPT : Molecular generation using a transformer-decoder model

Reference 2

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This paper cites Molecular similarity: a key technique in molecular informatics.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Molecular similarity: a key technique in molecular informatics

Reference 3

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This paper cites Paccmannrl: De novo generation of hit-like anticancer molecules from transcriptomic data via reinforcement learning.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Paccmannrl: De novo generation of hit-like anticancer molecules from transcriptomic data via reinforcement learning

Reference 4

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This paper cites PPL-MCTS: Constrained Textual Generation Through Discriminator-Guided MCTS Decoding.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization PPL-MCTS: Constrained Textual Generation Through Discriminator-Guided MCTS Decoding

Reference 5

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This paper cites The cost of new drug discovery and development.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization The cost of new drug discovery and development

Reference 6

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Observation 299f91ee-7b65-4f1d-b484-fc6c7e847d1d · outbound

This paper cites Mermaid: an open source automated hit-to-lead method based on deep reinforcement learning.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Mermaid: an open source automated hit-to-lead method based on deep reinforcement learning

Reference 7

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This paper cites Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions

Reference 8

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This paper cites https://www.alcf.anl.gov/polaris, last accessed on 10-2-2023.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization https://www.alcf.anl.gov/polaris, last accessed on 10-2-2023

Reference 9

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This paper cites Neural scaling of deep chemical models.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Neural scaling of deep chemical models

Reference 10

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Observation 2d6c710e-e35a-4b84-9477-da36f7d0049d · outbound

This paper cites Mimosa: Multi-constraint molecule sampling for molecule optimization.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Mimosa: Multi-constraint molecule sampling for molecule optimization

Reference 11

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This paper cites A new algorithm for data compression.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization A new algorithm for data compression

Reference 12

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Observation 4f03ba2f-0e9f-4d4e-90d2-071b2ed0d012 · outbound

This paper cites Scaling laws for reward model overoptimization.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Scaling laws for reward model overoptimization

Reference 13

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This paper cites Objective-Reinforced Generative Adversarial Networks (ORGAN) for Sequence Generation Models.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Objective-Reinforced Generative Adversarial Networks (ORGAN) for Sequence Generation Models

Reference 14

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This paper cites Covid-19 vaccines and variants of concern: A review.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Covid-19 vaccines and variants of concern: A review

Reference 15

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This paper cites Molecular optimization by capturing chemist’s intuition using deep neural networks.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Molecular optimization by capturing chemist’s intuition using deep neural networks

Reference 16

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Observation d84b3ac4-1383-4b14-8e8f-6968c5c0d480 · outbound

This paper cites Transformer-based molecular optimization beyond matched molecular pairs.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Transformer-based molecular optimization beyond matched molecular pairs

Reference 17

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This paper cites Structure modification in chemical databases.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Structure modification in chemical databases

Reference 18

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This paper cites Self-referencing embedded strings ( SELFIES ): A 100\ Machine Learning: Science and Technology, 1 0 (4): 0 045024, 2020.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Self-referencing embedded strings ( SELFIES ): A 100\ Machine Learning: Science and Technology, 1 0 (4): 0 045024, 2020

Reference 19

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This paper cites R D kit: Open-source cheminformatics software.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization R D kit: Open-source cheminformatics software

Reference 20

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This paper cites Machine Translation Decoding beyond Beam Search.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Machine Translation Decoding beyond Beam Search

Reference 21

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This paper cites Druggpt: A gpt-based strategy for designing potential ligands targeting specific proteins.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Druggpt: A gpt-based strategy for designing potential ligands targeting specific proteins

Reference 22

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This paper cites Drugimprover: Utilizing reinforcement learning for multi-objective alignment in drug optimization.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Drugimprover: Utilizing reinforcement learning for multi-objective alignment in drug optimization

Reference 23

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Observation 8ad4577c-f56b-477e-82a1-c3280eacf983 · outbound

This paper cites Entropy-reinforced planning with large language models for de novo drug discovery.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Entropy-reinforced planning with large language models for de novo drug discovery

Reference 24

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ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Drugex v3: scaffold-constrained drug design with graph transformer-based reinforcement learning

Reference 25

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This paper cites Sora: A Review on Background, Technology, Limitations, and Opportunities of Large Vision Models.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Sora: A Review on Background, Technology, Limitations, and Opportunities of Large Vision Models

Reference 26

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This paper cites Reinvent 4: Modern ai--driven generative molecule design.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Reinvent 4: Modern ai--driven generative molecule design

Reference 27

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This paper cites The different mechanisms of cancer drug resistance: a brief review.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization The different mechanisms of cancer drug resistance: a brief review

Reference 28

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This paper cites LLM drug discovery challenge: A contest as a feasibility study on the utilization of large language models in medicinal chemistry.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization LLM drug discovery challenge: A contest as a feasibility study on the utilization of large language models in medicinal chemistry

Reference 29

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This paper cites Exploring deep recurrent models with reinforcement learning for molecule design.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Exploring deep recurrent models with reinforcement learning for molecule design

Reference 30

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This paper cites An empirical evaluation of github copilot's code suggestions.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization An empirical evaluation of github copilot's code suggestions

Reference 31

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This paper cites Molecular de-novo design through deep reinforcement learning.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Molecular de-novo design through deep reinforcement learning

Reference 32

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This paper cites Training language models to follow instructions with human feedback.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Training language models to follow instructions with human feedback

Reference 33

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This paper cites Deep reinforcement learning for de novo drug design.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Deep reinforcement learning for de novo drug design

Reference 34

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This paper cites Drug repurposing: Progress, challenges and recommendations.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Drug repurposing: Progress, challenges and recommendations

Reference 35

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ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Markov decision processes: Discrete stochastic dynamic programming

Reference 36

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ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization C5T5: Controllable Generation of Organic Molecules with Transformers

Reference 37

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This paper cites To beam or not to beam: That is a question of cooperation for language GANs.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization To beam or not to beam: That is a question of cooperation for language GANs

Reference 38

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This paper cites Neural Machine Translation of Rare Words with Subword Units.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Neural Machine Translation of Rare Words with Subword Units

Reference 39

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This paper cites Deep reinforcement learning for multiparameter optimization in de novo drug design.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Deep reinforcement learning for multiparameter optimization in de novo drug design

Reference 40

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This paper cites Molsearch: search-based multi-objective molecular generation and property optimization.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Molsearch: search-based multi-objective molecular generation and property optimization

Reference 41

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This paper cites Reinforcement learning for systems pharmacology-oriented and personalized drug design.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Reinforcement learning for systems pharmacology-oriented and personalized drug design

Reference 42

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This paper cites Drlinker: Deep reinforcement learning for optimization in fragment linking design.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Drlinker: Deep reinforcement learning for optimization in fragment linking design

Reference 43

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This paper cites Matched molecular pair analysis in short: algorithms, applications and limitations.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Matched molecular pair analysis in short: algorithms, applications and limitations

Reference 44

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This paper cites Benchmarking language-based docking models.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Benchmarking language-based docking models

Reference 45

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This paper cites A reinforcement learning approach for protein--ligand binding pose prediction.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization A reinforcement learning approach for protein--ligand binding pose prediction

Reference 46

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This paper cites A Transformer-based Generative Model for De Novo Molecular Design.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization A Transformer-based Generative Model for De Novo Molecular Design

Reference 47

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This paper cites Smiles, a chemical language and information system.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Smiles, a chemical language and information system

Reference 48

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This paper cites A brief overview of chatgpt: The history, status quo and potential future development.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization A brief overview of chatgpt: The history, status quo and potential future development

Reference 49

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This paper cites Covid-19 pathophysiology: A review.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Covid-19 pathophysiology: A review

Reference 50

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This paper cites Planning with Large Language Models for Code Generation.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Planning with Large Language Models for Code Generation

Reference 51

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This paper cites Universal approach to de novo drug design for target proteins using deep reinforcement learning.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Universal approach to de novo drug design for target proteins using deep reinforcement learning

Reference 52

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T17:48:49.301532Z

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This paper cites Optimization of molecules via deep reinforcement learning.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Optimization of molecules via deep reinforcement learning

Reference 53

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Observation 5326699d-1bd9-4d29-bd40-c49afbf595d2 · outbound

This paper cites @esa (Ref.

ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization @esa (Ref

Reference 54

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Observation ff1d1ac8-ab4a-431b-9098-9f554a694525 · outbound

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ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Unresolved cited work

Reference 55

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Observation f375dbfd-512c-434c-a076-32a551b2befc · outbound

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ScaffoldGPT: A Scaffold-based GPT Model for Drug Optimization Unresolved cited work

Reference 56

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