Paper Citation Record · LEDGER

Fast and Accurate Antibody Sequence Design via Structure Retrieval

As of 8 August 2026, this Paper Citation Record lists 25 of 25 outbound references and 4 inbound Pith citation observations for arXiv:2502.19395.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2502.19395 v1

Coverage vector

measured 25 of 25 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-08T12:26:56.525560Z

measured 29 of 29 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 4 of 4 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-04T20:20:51.797200Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-22T09:31:22.701956Z

Reference resolution

25 of 25 outbound references displayed

verified exact2
verified fuzzy16
unresolved7
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 844eaf8c-4ef8-4238-ad0b-ff7a98efd4b0 · outbound

This paper cites In contrast, other baseline models are adversely affected by hallucinations stemming from conserved backbone structures.

Fast and Accurate Antibody Sequence Design via Structure Retrieval In contrast, other baseline models are adversely affected by hallucinations stemming from conserved backbone structures

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.716854Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation b12babd1-8bbe-4b24-a80d-7b854c36dac9 · outbound

This paper cites The neighborhood of a node vi, denoted as Ni, consists of the adjacency nodes of vi, that is, {vj|(vi, vj) ∈ E}.

Fast and Accurate Antibody Sequence Design via Structure Retrieval The neighborhood of a node vi, denoted as Ni, consists of the adjacency nodes of vi, that is, {vj|(vi, vj) ∈ E}

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.945391Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 4ee2aa8a-0ad4-4e4d-8b0e-6a9291cd4ff2 · outbound

This paper cites Besides, a dropout function (Srivastava et al.,.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Besides, a dropout function (Srivastava et al.,

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.830530Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 794ce121-6703-4829-ae9e-a7a56bf29fd6 · outbound

This paper cites an unresolved cited work.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Unresolved cited work

Reference 7

Resolution: unresolved; raw_fallback, observed 2026-08-08T12:26:56.992484Z

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Observation 7eb19317-5ab0-4511-af3d-2f89f4bf1499 · outbound

This paper cites CDR Embedding Generation.

Fast and Accurate Antibody Sequence Design via Structure Retrieval CDR Embedding Generation

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.928422Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 326a12c3-44fe-4829-a5e0-4408bb0b19d5 · outbound

This paper cites MEAN (Kong et al., 2023b) and dyMEAN (Kong et al., 2023a) employ graph neural networks to predict the structure and sequence of CDRs.

Fast and Accurate Antibody Sequence Design via Structure Retrieval MEAN (Kong et al., 2023b) and dyMEAN (Kong et al., 2023a) employ graph neural networks to predict the structure and sequence of CDRs

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.961106Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 15d002dd-a4ff-4b59-9bbf-2a94c969209a · outbound

This paper cites Hyperparameter Value Description Input noise ratio 0.15 Ratio of the input coordinates with added Gaussian noise.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Hyperparameter Value Description Input noise ratio 0.15 Ratio of the input coordinates with added Gaussian noise

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.911959Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 079c0aa7-6b5c-43b4-8a02-7854d93ea27a · outbound

This paper cites Notice that we remove CDR sequences that are identical to those in the dataset to elimi- nate redundancy in the dataset.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Notice that we remove CDR sequences that are identical to those in the dataset to elimi- nate redundancy in the dataset

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.895576Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation c63cb909-8f08-4547-bab4-7b97f975d12c · outbound

This paper cites PyIgClassify cluster labels (North et al., 2011; Adolf-Bryfogle et al.,.

Fast and Accurate Antibody Sequence Design via Structure Retrieval PyIgClassify cluster labels (North et al., 2011; Adolf-Bryfogle et al.,

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.862992Z

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No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 2a503981-fb89-4365-a1f5-1aa68c341f03 · outbound

This paper cites an unresolved cited work.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Unresolved cited work

Reference 16

Resolution: unresolved; raw_fallback, observed 2026-08-08T12:26:56.846393Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation f1c2e241-d741-4caf-912d-b173ce808446 · outbound

This paper cites Official code is available at: https://github.com/steineggerlab/foldseek.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Official code is available at: https://github.com/steineggerlab/foldseek

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.815149Z

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No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 30a48085-04e4-44a7-b1a3-4c1a52f0e9d9 · outbound

This paper cites an unresolved cited work.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Unresolved cited work

Reference 19

Resolution: unresolved; raw_fallback, observed 2026-08-08T12:26:56.798276Z

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No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation d5d0898d-02ee-42fc-ad2d-71eaad053639 · outbound

This paper cites Official code is available at: https://github.com/dauparas/ProteinMPNN.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Official code is available at: https://github.com/dauparas/ProteinMPNN

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.780605Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 22243ef8-1152-4df5-9b0e-92671c2b0451 · outbound

This paper cites The profile of model weights is available at: https://zenodo.org/records/8164693.

Fast and Accurate Antibody Sequence Design via Structure Retrieval The profile of model weights is available at: https://zenodo.org/records/8164693

Reference 22

Resolution: verified exact; raw_fallback, observed 2026-08-08T12:26:56.638850Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 8ca6763c-229e-460c-bb9f-b04ca7c08665 · outbound

This paper cites an unresolved cited work.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Unresolved cited work

Reference 23

Resolution: unresolved; raw_fallback, observed 2026-08-08T12:26:56.747032Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 20d4fd62-f015-4b58-afab-c155741400c2 · outbound

This paper cites AntiFold excels in sequence recovery and structural similarity while also demonstrates stronger correlations in predicting antibody-antigen binding affinity in a zero-shot manner.

Fast and Accurate Antibody Sequence Design via Structure Retrieval AntiFold excels in sequence recovery and structural similarity while also demonstrates stronger correlations in predicting antibody-antigen binding affinity in a zero-shot manner

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.731989Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 412337ed-258f-434a-b1b2-8d24aee27455 · outbound

This paper cites Retrieval-Augmented Generation for Large Language Models: A Survey.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Retrieval-Augmented Generation for Large Language Models: A Survey

Reference 1989

Resolution: unresolved; no resolver link, observed 2026-08-08T12:26:56.398278Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0f230b8e-6f95-40eb-845d-636851b8c2be · outbound

This paper cites Dropout: a simple way to prevent neural networks from overfitting.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Dropout: a simple way to prevent neural networks from overfitting

Reference 1998

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:57.038514Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 6517a408-b4e0-470d-9335-e54dbf54cf57 · outbound

This paper cites Se(3)-transformers: 3d roto- translation equivariant attention networks.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Se(3)-transformers: 3d roto- translation equivariant attention networks

Reference 2007

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:57.089884Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation d341b02c-7122-4f6d-999a-44944d4c6ecf · outbound

This paper cites Empirical Evaluation of Rectified Activations in Convolutional Network.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Empirical Evaluation of Rectified Activations in Convolutional Network

Reference 2015

Resolution: unresolved; no resolver link, observed 2026-08-08T12:26:56.416204Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 82db3da8-b994-4b41-a7a6-91424375aed4 · outbound

This paper cites To evaluate the model efficiency, we utilize 5, 000 predicted CDR-H3 loops from the Observed Antibody Space (OAS) (Olsen et al., 2022), denoted as OAS-H3.

Fast and Accurate Antibody Sequence Design via Structure Retrieval To evaluate the model efficiency, we utilize 5, 000 predicted CDR-H3 loops from the Observed Antibody Space (OAS) (Olsen et al., 2022), denoted as OAS-H3

Reference 2018

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.879159Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 1c77ed1d-c9e2-4d6b-8c50-2dee1bece7fa · outbound

This paper cites ESM-IF1 (Hsu et al.,.

Fast and Accurate Antibody Sequence Design via Structure Retrieval ESM-IF1 (Hsu et al.,

Reference 2021

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:56.976159Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 58f4a140-aa89-4175-a678-7a6ea6a538bf · outbound

This paper cites The similarity of the search result is evaluated by US-align (Zhang et al., 2022).

Fast and Accurate Antibody Sequence Design via Structure Retrieval The similarity of the search result is evaluated by US-align (Zhang et al., 2022)

Reference 2022

Resolution: verified fuzzy; raw_fallback, observed 2026-08-08T12:26:57.008799Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 00a4b612-b5ce-4f24-846a-31abec0d686e · outbound

This paper cites an unresolved cited work.

Fast and Accurate Antibody Sequence Design via Structure Retrieval Unresolved cited work

Reference 2023

Resolution: unresolved; raw_fallback, observed 2026-08-08T12:26:56.763615Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation a53fbc43-7d36-40bc-8785-1b05e68f68a1 · outbound

This paper cites AntiFold: Improved antibody structure-based design using inverse folding.

Fast and Accurate Antibody Sequence Design via Structure Retrieval AntiFold: Improved antibody structure-based design using inverse folding

Reference 2024

Resolution: verified exact; local_arxiv, observed 2026-08-08T12:26:56.681574Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Pith citing papers

Observation c2d45eb4-e713-422d-8ee0-09db530ba1d6 · inbound

Tokenizing Loops of Antibodies cites this paper.

Tokenizing Loops of Antibodies Fast and Accurate Antibody Sequence Design via Structure Retrieval

Reference 67

Resolution: unresolved; no resolver link, observed 2026-08-04T20:20:51.797200Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation be556f70-62ac-41ed-90c7-ffe4528a17d9 · inbound

EvoStruct: Bridging Evolutionary and Structural Priors for Antibody CDR Design via Protein Language Model Adaptation cites this paper.

EvoStruct: Bridging Evolutionary and Structural Priors for Antibody CDR Design via Protein Language Model Adaptation Fast and Accurate Antibody Sequence Design via Structure Retrieval

Reference 123

Resolution: verified exact; arxiv_id, observed 2026-05-21T05:09:38.627996Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation a24b9293-679c-4f18-a970-2a9ead21c40f · inbound

ConTact: Contact-First Antibody CDR Design via Explicit Interface Reasoning cites this paper.

ConTact: Contact-First Antibody CDR Design via Explicit Interface Reasoning Fast and Accurate Antibody Sequence Design via Structure Retrieval

Reference 123

Resolution: verified exact; arxiv_id, observed 2026-05-22T09:31:22.704623Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

Observation 714191cb-b4ee-45dc-bb04-f6ad3facbee0 · inbound

AgForce Enables Antigen-conditioned Generative Antibody Design cites this paper.

AgForce Enables Antigen-conditioned Generative Antibody Design Fast and Accurate Antibody Sequence Design via Structure Retrieval

Reference 123

Resolution: verified exact; arxiv_id, observed 2026-05-22T09:21:20.491851Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.