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Paper Citation Record · LEDGER

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization

As of 9 August 2026, this Paper Citation Record lists 14 of 14 outbound references and 2 inbound Pith citation observations for arXiv:2505.16094.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.16094 v1

Coverage vector

measured 14 of 14 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T15:09:20.914139Z

measured 16 of 16 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-04T20:55:41.887147Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-10T06:06:18.720149Z

Reference resolution

14 of 14 outbound references displayed

  • verified exact0
  • verified fuzzy6
  • unresolved6
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch2

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 8d950218-8c54-4ad3-a965-786e176c6495 · outbound

This paper cites ChatMol: A Versatile Molecule Designer Based on the Numerically Enhanced Large Language Model.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization ChatMol: A Versatile Molecule Designer Based on the Numerically Enhanced Large Language Model

Reference 2

Resolution
metadata mismatch
local_arxiv, observed 2026-08-07T15:09:21.443415Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:19.625438Z digest=sha256:5063d6359a21e1736978a072db93747c7e29453cc6aa5cfb2cc43f03a39f8add

Observation bf8f6312-c796-4f8d-943b-ee2cc13d614a · outbound

This paper cites Sunghwan Kim, Paul A Thiessen, Evan E Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A Shoemaker, and 1 others.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization Sunghwan Kim, Paul A Thiessen, Evan E Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A Shoemaker, and 1 others

Reference 5

Resolution
unresolved
no resolver link, observed 2026-08-07T15:09:19.941247Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T15:09:19.941247Z digest=sha256:3342b974a7fcdc58900fc28246f4f909a6ef1968b2063108d821e9c67941fd60

Observation f95a36bd-c877-4147-bd8e-d9370ce10c7c · outbound

This paper cites an unresolved cited work.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization Unresolved cited work

Reference 8

Resolution
unresolved
raw_fallback, observed 2026-08-07T15:09:23.372364Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.290746Z digest=sha256:2b879871ca5e974ea784c946eb0143fc44e7f0473e0af37611069e5da1cffe25

Observation 39a7166c-3836-4644-aa15-02257e491a79 · outbound

This paper cites ready-to-dock.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization ready-to-dock

Reference 10

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T15:09:22.816119Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.519644Z digest=sha256:4c1675ffa6c39eaa69a6bc4c34faa39715dde9331b8c7a4828040f6773a1d2e1

Observation b3f42d6b-fe6e-42c6-a7cb-b15893a4367b · outbound

This paper cites • Novelty Rate:The novelty rate (Brown et al.,.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization • Novelty Rate:The novelty rate (Brown et al.,

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T15:09:22.204069Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.741573Z digest=sha256:62022484815ec459ab860112cc9816e91acc628d4b79f30d694832bc1753f46d

Observation 7f2ab203-9aaf-46a8-aad6-7867191eff1a · outbound

This paper cites Cate- gory.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization Cate- gory

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T15:09:21.616221Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.914139Z digest=sha256:b4b1ba16772b29f09f9ae45abb57e3cc97979863037cbd902bad95090d74d74b

Observation 99837bd7-48e7-47f4-8782-b35f5716ea52 · outbound

This paper cites Can LLMs Generate Diverse Molecules? Towards Alignment with Structural Diversity.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization Can LLMs Generate Diverse Molecules? Towards Alignment with Structural Diversity

Reference 1968

Resolution
unresolved
no resolver link, observed 2026-08-07T15:09:19.714746Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T15:09:19.714746Z digest=sha256:fadad7600acdd404f4533ed3201e7874374d850b8160bb3364c2ff2fcede9631

Observation 2402a4d4-ce7d-4279-adfa-8ab7188266d5 · outbound

This paper cites These repre- sentations are well-suited for LLMs due to their compatibility with token-based language model- ing.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization These repre- sentations are well-suited for LLMs due to their compatibility with token-based language model- ing

Reference 1988

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T15:09:23.600596Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.185703Z digest=sha256:49627f3fb6c37e2417f8554149ddee16fed36948340bc5dd2001b08751f2db97

Observation cce9a6fd-a36a-4e62-8660-82e9bc3e0b44 · outbound

This paper cites It serves as an indicator of the model’s generalization ability and its potential to discover previously unseen chemical entities.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization It serves as an indicator of the model’s generalization ability and its potential to discover previously unseen chemical entities

Reference 2019

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T15:09:21.923379Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.820301Z digest=sha256:b037342895366ac09f0e5f98f11c4f4ad278e9a19263a55332adc2f484db5376

Observation aa071bb4-31e1-4589-83a6-23be3e963e58 · outbound

This paper cites InInternational Conference on Machine Learning, pages 4849–4859.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization InInternational Conference on Machine Learning, pages 4849–4859

Reference 2020

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T15:09:23.858154Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:19.828209Z digest=sha256:f8326f1db4f0f7de51f01e57c705e4c09fc1d2bd0e006749cb573132300d8a37

Observation 102c06ee-b82a-409f-a4ea-a6dfab236326 · outbound

This paper cites an unresolved cited work.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization Unresolved cited work

Reference 2022

Resolution
unresolved
raw_fallback, observed 2026-08-07T15:09:22.535089Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.655649Z digest=sha256:611746312d2fcbab9982e75e78cae549c18fd8d06b9a7a96368e92fdf5098f7b

Observation 00fe11a6-18ff-418f-b84b-c4dc918b5e5d · outbound

This paper cites an unresolved cited work.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization Unresolved cited work

Reference 2023

Resolution
unresolved
raw_fallback, observed 2026-08-07T15:09:23.140185Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.412374Z digest=sha256:6be1db56fee48a213dc34ea5ea88ce9d2efaa1439cbd15174a6676c0296881b4

Observation ac9eadec-827f-4c97-8bcd-b37e1bd10267 · outbound

This paper cites Crossing New Frontiers: Knowledge-Augmented Large Language Model Prompting for Zero-Shot Text-Based De Novo Molecule Design.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization Crossing New Frontiers: Knowledge-Augmented Large Language Model Prompting for Zero-Shot Text-Based De Novo Molecule Design

Reference 2024

Resolution
metadata mismatch
local_arxiv, observed 2026-08-07T15:09:21.099379Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T15:09:20.076792Z digest=sha256:bd793e8e676afce679bfe74c75f1af77c1e5d3118bf9868a03b63a207aef0bea

Observation 7e915868-e466-489f-b6ef-ce38c396c1c9 · outbound

This paper cites MolGAN: An implicit generative model for small molecular graphs.

A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization MolGAN: An implicit generative model for small molecular graphs

Reference 2025

Resolution
unresolved
no resolver link, observed 2026-08-07T15:09:19.461632Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T15:09:19.461632Z digest=sha256:aa21bc7d43c1d8407e29f5ed867660cc9a828bc1536983c8016ac938e988de26

Pith citing papers

Observation 199aa31d-0d47-4637-ab57-2fd5abdc14fc · inbound

A Systematic Survey on Large Language Models for Evolutionary Optimization: From Modeling to Solving cites this paper.

A Systematic Survey on Large Language Models for Evolutionary Optimization: From Modeling to Solving A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization

Reference 209

Resolution
unresolved
no resolver link, observed 2026-08-04T20:55:41.887147Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-04T20:55:41.887147Z digest=sha256:24e4f7df347e4853c733e0e4b7d99e775758cf1169a8a121232f5f29c0a7c780

Observation 0def9cd3-c548-4ef5-a8c1-6ae680dad6f6 · inbound

HopRank: Self-Supervised LLM Preference-Tuning on Graphs for Few-Shot Node Classification cites this paper.

HopRank: Self-Supervised LLM Preference-Tuning on Graphs for Few-Shot Node Classification A Survey of Large Language Models for Text-Guided Molecular Discovery: from Molecule Generation to Optimization

Reference 31

Resolution
verified exact
arxiv_id, observed 2026-05-10T06:06:18.721435Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-05-10T06:04:24.381169Z digest=sha256:853b6e3deb29455ac9fc4a9d59b3fbaf203d10f9485ec9aa080006538dc06c88