Paper Citation Record · LEDGER

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing

As of 9 August 2026, this Paper Citation Record lists 68 of 68 outbound references and 1 inbound Pith citation observation for arXiv:2505.17552.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.17552 v2

Coverage vector

measured 68 of 68 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T14:48:12.756180Z

measured 69 of 69 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-27T10:25:32.712243Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-03T09:17:48.748240Z

Reference resolution

68 of 68 outbound references displayed

verified exact2
verified fuzzy41
unresolved25
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 2f654b47-1dfe-48ea-870a-ed1ee2bc8a5a · outbound

This paper cites write newline.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing write newline

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:06.869319Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation da85e7fd-53f0-4b84-b3b6-c0354a7c166e · outbound

This paper cites J., Bambrick, J., et al.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing J., Bambrick, J., et al

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:06.939612Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b2357c5b-0ea2-46bf-9dd0-04c74badecaa · outbound

This paper cites and Mann, M.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing and Mann, M

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:07.013019Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 139e9540-8637-4872-a864-a433d2158fb6 · outbound

This paper cites H., Bilmes, J., and Noble, W.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing H., Bilmes, J., and Noble, W

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:20.768205Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 61f4d2d3-7693-47fc-84d1-cf7ebb8dd940 · outbound

This paper cites A., Tabb, D.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing A., Tabb, D

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:20.619092Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation db923bbf-9298-4d8d-a659-9be4c183ed6f · outbound

This paper cites Learning to rank using gradient descent.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Learning to rank using gradient descent

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:20.486701Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 1af54c1d-e643-4570-bab3-6928247764a4 · outbound

This paper cites an unresolved cited work.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Unresolved cited work

Reference 7

Resolution: unresolved; raw_fallback, observed 2026-08-07T14:48:20.329219Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 22d5cd78-9b00-4835-b004-3c2876522935 · outbound

This paper cites Learning to rank: from pairwise approach to listwise approach.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Learning to rank: from pairwise approach to listwise approach

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:20.178558Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 619830a3-9ff5-4a3c-9423-11485c09347b · outbound

This paper cites Quantitative and in-depth survey of the isotopic abundance distribution errors in shotgun proteomics.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Quantitative and in-depth survey of the isotopic abundance distribution errors in shotgun proteomics

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:19.976970Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5d0ac939-0086-42c8-a3e8-462af27e7457 · outbound

This paper cites J., and Cheng, J.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing J., and Cheng, J

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:19.770690Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 075e42b3-8679-41e2-a93d-c748e28b7c0e · outbound

This paper cites pnovo: de novo peptide sequencing and identification using hcd spectra.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing pnovo: de novo peptide sequencing and identification using hcd spectra

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:19.654798Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8a907f22-2ac8-4d11-b832-bf418d44d3b8 · outbound

This paper cites pnovo+: de novo peptide sequencing using complementary hcd and etd tandem mass spectra.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing pnovo+: de novo peptide sequencing using complementary hcd and etd tandem mass spectra

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:19.435700Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 14ac77b8-918f-4a03-b207-deff73cc6979 · outbound

This paper cites Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:19.315728Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation cc4428d9-2421-4b48-a49f-a492dbaa7fb2 · outbound

This paper cites Rethinking Attention with Performers.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Rethinking Attention with Performers

Reference 14

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:07.788612Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7b8ea489-5248-4f0f-aa24-4a37d6b0f8d7 · outbound

This paper cites A., Clauser, K.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing A., Clauser, K

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:19.118244Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c228205d-6c63-491c-9f6e-97819b128306 · outbound

This paper cites B., Williams, W., Beljouw, S.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing B., Williams, W., Beljouw, S

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:18.950617Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 0f01724f-151f-4072-8d19-bac050424b66 · outbound

This paper cites B., Williams, W., van Beljouw, S.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing B., Williams, W., van Beljouw, S

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:18.783470Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e199540b-d35c-4d09-99e0-d2af10ae90cd · outbound

This paper cites and Doolittle, R.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing and Doolittle, R

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:18.666111Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4e6d7b7b-780b-4776-94eb-ac9fea8bfe08 · outbound

This paper cites Deep multimodal networks for m-type star classification with paired spectrum and photometric image.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Deep multimodal networks for m-type star classification with paired spectrum and photometric image

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:18.454986Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation ce58125b-87f8-4142-bf8f-d91697f175b1 · outbound

This paper cites Rethink training of bert rerankers in multi-stage retrieval pipeline.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Rethink training of bert rerankers in multi-stage retrieval pipeline

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:18.286777Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation bf14dc05-b684-41e2-85bf-7eb6d619dbe8 · outbound

This paper cites Learning-to-Rank with BERT in TF-Ranking.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Learning-to-Rank with BERT in TF-Ranking

Reference 21

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:08.499435Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b58e2c61-c806-41ae-84ee-1a55bddced7b · outbound

This paper cites L., Pan, C., Chourey, K., and Giannone, R.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing L., Pan, C., Chourey, K., and Giannone, R

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:18.171894Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation ccca617a-36d0-4746-a273-e7f883463e04 · outbound

This paper cites Axial Attention in Multidimensional Transformers.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Axial Attention in Multidimensional Transformers

Reference 23

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:08.668212Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a5102ad0-d8ce-46d0-8c51-cd3555a5bd36 · outbound

This paper cites Ccnet: Criss-cross attention for semantic segmentation.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Ccnet: Criss-cross attention for semantic segmentation

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:17.981647Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 69ef58c9-a619-4f44-aec4-2f4dc4773214 · outbound

This paper cites LLM-Blender: Ensembling Large Language Models with Pairwise Ranking and Generative Fusion.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing LLM-Blender: Ensembling Large Language Models with Pairwise Ranking and Generative Fusion

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:08.836617Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 17b87820-d812-4809-b819-ca7405524a29 · outbound

This paper cites ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing

Reference 26

Resolution: verified exact; local_arxiv, observed 2026-08-07T14:48:13.123409Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 675db663-dcf3-41d0-9e80-c9ca936a1f81 · outbound

This paper cites Contranovo: A contrastive learning approach to enhance de novo peptide sequencing.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Contranovo: A contrastive learning approach to enhance de novo peptide sequencing

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:17.790964Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e367a20a-b57a-43ab-b460-a571bfef1878 · outbound

This paper cites Highly accurate protein structure prediction with alphafold.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Highly accurate protein structure prediction with alphafold

Reference 28

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:09.055801Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b87d2d94-976d-489d-8aa6-ab794f499705 · outbound

This paper cites W., Chuangsuwanich, E., and Sriswasdi, S.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing W., Chuangsuwanich, E., and Sriswasdi, S

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:17.625295Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9a6c012d-3d6e-41d4-a884-a89b1d308d24 · outbound

This paper cites Deep learning.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Deep learning

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:09.179520Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b2d70d36-4544-46c2-b509-a9b755344e96 · outbound

This paper cites V., Valente, R.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing V., Valente, R

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:17.464450Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 1dbe0460-3272-4b28-b6f0-df3d03110317 · outbound

This paper cites Accurate de novo peptide sequencing using fully convolutional neural networks.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Accurate de novo peptide sequencing using fully convolutional neural networks

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:17.309818Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 328c9d5b-68a7-48e8-80f5-2d85e774ba3b · outbound

This paper cites Novor: real-time peptide de novo sequencing software.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Novor: real-time peptide de novo sequencing software

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:17.097323Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8bcb2b93-e8c7-4ba1-9d68-8478e9472d01 · outbound

This paper cites Peaks: powerful software for peptide de novo sequencing by tandem mass spectrometry.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Peaks: powerful software for peptide de novo sequencing by tandem mass spectrometry

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:16.870153Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation b0195823-0ea4-47a8-aa0d-7da70798fd27 · outbound

This paper cites Mitigating the missing-fragmentation problem in de novo peptide sequencing with a two-stage graph-based deep learning model.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Mitigating the missing-fragmentation problem in de novo peptide sequencing with a two-stage graph-based deep learning model

Reference 35

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:09.468669Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4d797d38-5bca-49b2-853c-56d8c0cd55df · outbound

This paper cites E., Diament, B., Frewen, B., Howbert, J.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing E., Diament, B., Frewen, B., Howbert, J

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:16.683514Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 3418e323-8c9e-4e05-a499-bc32582fa648 · outbound

This paper cites an unresolved cited work.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Unresolved cited work

Reference 37

Resolution: unresolved; raw_fallback, observed 2026-08-07T14:48:16.471191Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e0768ab0-fc70-4208-8552-e2e3a47b55c2 · outbound

This paper cites an unresolved cited work.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Unresolved cited work

Reference 38

Resolution: unresolved; raw_fallback, observed 2026-08-07T14:48:16.309570Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 94c6aac1-a263-48c4-ad3e-49703d9d149d · outbound

This paper cites I., Keller, A., Kolker, E., and Aebersold, R.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing I., Keller, A., Kolker, E., and Aebersold, R

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:16.113860Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 67325573-1178-492b-a676-c0e503be9142 · outbound

This paper cites an unresolved cited work.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Unresolved cited work

Reference 40

Resolution: unresolved; raw_fallback, observed 2026-08-07T14:48:16.000589Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 678cdd91-88a8-4fd8-ac60-eed3db7f3c21 · outbound

This paper cites Multi-Stage Document Ranking with BERT.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Multi-Stage Document Ranking with BERT

Reference 41

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:09.897103Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4529e7b0-debf-4d4d-874c-3a16056906ab · outbound

This paper cites Document Ranking with a Pretrained Sequence-to-Sequence Model.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Document Ranking with a Pretrained Sequence-to-Sequence Model

Reference 42

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:09.986880Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 18d8a766-af3f-484a-9ff6-262d26594023 · outbound

This paper cites Training language models to follow instructions with human feedback.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Training language models to follow instructions with human feedback

Reference 43

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:10.062679Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1337d2b3-83c9-492b-9bf1-308480f217f6 · outbound

This paper cites M., Liu, J., Verkuil, R., Meier, J., Canny, J., Abbeel, P., Sercu, T., and Rives, A.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing M., Liu, J., Verkuil, R., Meier, J., Canny, J., Abbeel, P., Sercu, T., and Rives, A

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:15.797741Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 81b04435-1f60-4b96-b54b-1178b21d702f · outbound

This paper cites RocketQAv2: A Joint Training Method for Dense Passage Retrieval and Passage Re-ranking.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing RocketQAv2: A Joint Training Method for Dense Passage Retrieval and Passage Re-ranking

Reference 45

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:10.102237Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8482d47e-da3d-40af-bf27-0885b2f824d8 · outbound

This paper cites W., Lam, H., Eng, J.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing W., Lam, H., Eng, J

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:15.655850Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation a84961a6-62ee-4722-91c6-423d058e9c3e · outbound

This paper cites an unresolved cited work.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Unresolved cited work

Reference 47

Resolution: unresolved; raw_fallback, observed 2026-08-07T14:48:15.492485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 04f18909-3f37-4475-bbb5-885662d00ed6 · outbound

This paper cites L., Smith, L.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing L., Smith, L

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:15.396458Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation f723254e-7bd4-4328-8313-871c11a08c41 · outbound

This paper cites H., Zhang, X., Xin, L., Shan, B., and Li, M.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing H., Zhang, X., Xin, L., Shan, B., and Li, M

Reference 49

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:10.745267Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 34271ee9-3307-48a7-9588-0564205c236f · outbound

This paper cites Axial-deeplab: Stand-alone axial-attention for panoptic segmentation.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Axial-deeplab: Stand-alone axial-attention for panoptic segmentation

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:15.220791Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 5fd04f35-bdce-4b7d-bf08-bd42c8c005dc · outbound

This paper cites S., Cha, S.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing S., Cha, S

Reference 51

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:10.955907Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 27df6d7d-ad87-422a-9032-831b8e7eb5a3 · outbound

This paper cites Linformer: Self-Attention with Linear Complexity.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Linformer: Self-Attention with Linear Complexity

Reference 52

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:11.065207Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c882b1d1-9da2-42bd-9b40-33bd2435c886 · outbound

This paper cites Biatnovo: A self-attention based bidirectional peptide sequencing method.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Biatnovo: A self-attention based bidirectional peptide sequencing method

Reference 53

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:15.097072Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 0f2e89e5-7c3c-4b3a-97e4-5ce0e408e45c · outbound

This paper cites Listwise approach to learning to rank: theory and algorithm.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Listwise approach to learning to rank: theory and algorithm

Reference 54

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:14.945316Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 454bd1a6-9bbe-4904-bebd-e243e66e5d08 · outbound

This paper cites AdaNovo: Adaptive \emph{De Novo} Peptide Sequencing with Conditional Mutual Information.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing AdaNovo: Adaptive \emph{De Novo} Peptide Sequencing with Conditional Mutual Information

Reference 55

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:11.335986Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a28840bf-1942-4829-bcf1-45d32a032975 · outbound

This paper cites an unresolved cited work.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Unresolved cited work

Reference 56

Resolution: unresolved; raw_fallback, observed 2026-08-07T14:48:14.831931Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 05620c0e-7dba-4ecf-8fc7-61a7b3b84f93 · outbound

This paper cites pnovo 3: precise de novo peptide sequencing using a learning-to-rank framework.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing pnovo 3: precise de novo peptide sequencing using a learning-to-rank framework

Reference 57

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:14.666256Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation fc9b1f8b-b22c-40de-8383-010738ac3c0e · outbound

This paper cites Introducing -helixnovo for practical large-scale de novo peptide sequencing.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Introducing -helixnovo for practical large-scale de novo peptide sequencing

Reference 58

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:14.586129Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 78e340c9-8086-4b00-9419-8cd3ee4e1dae · outbound

This paper cites Introducing -helixnovo for practical large-scale de novo peptide sequencing.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Introducing -helixnovo for practical large-scale de novo peptide sequencing

Reference 59

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:14.357450Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 6db6be57-516a-4157-aaa4-e5a33de7de48 · outbound

This paper cites an unresolved cited work.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Unresolved cited work

Reference 60

Resolution: unresolved; no resolver link, observed 2026-08-07T14:48:11.847598Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 371ea4ec-93ab-44ec-a3a2-3c93307784ca · outbound

This paper cites E., Bittremieux, W., Melendez, C.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing E., Bittremieux, W., Melendez, C

Reference 61

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:14.235489Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c8f121e3-d21a-4aa4-8d18-8d5b5b1ec156 · outbound

This paper cites -primenovo: An accurate and efficient non-autoregressive deep learning model for de novo peptide sequencing.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing -primenovo: An accurate and efficient non-autoregressive deep learning model for de novo peptide sequencing

Reference 62

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:14.050116Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4bc05eb4-7a54-4109-8592-ca2728a3649b · outbound

This paper cites -primenovo: an accurate and efficient non-autoregressive deep learning model for de novo peptide sequencing.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing -primenovo: an accurate and efficient non-autoregressive deep learning model for de novo peptide sequencing

Reference 63

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:13.955779Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9c28d5dc-4523-4235-abef-1ca127cfbc40 · outbound

This paper cites NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics

Reference 64

Resolution: verified exact; local_arxiv, observed 2026-08-07T14:48:12.925540Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 7b78f7b6-083f-4b2e-a6f7-a2eedef756b3 · outbound

This paper cites pdeep: predicting ms/ms spectra of peptides with deep learning.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing pdeep: predicting ms/ms spectra of peptides with deep learning

Reference 65

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:13.815399Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 6bdd1dfd-d421-487e-a599-4c6903272ed0 · outbound

This paper cites Rankt5: Fine-tuning t5 for text ranking with ranking losses.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing Rankt5: Fine-tuning t5 for text ranking with ranking losses

Reference 66

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:13.662432Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 1da39f64-9fea-45dd-b0d8-d2f1c9f7111d · outbound

This paper cites P., Wilhelm, M., Schmidt, T., M \'e dard, G., Zerweck, J., Knaute, T., Wenschuh, H., Reimer, U., Schnatbaum, K., and Kuster, B.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing P., Wilhelm, M., Schmidt, T., M \'e dard, G., Zerweck, J., Knaute, T., Wenschuh, H., Reimer, U., Schnatbaum, K., and Kuster, B

Reference 67

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:13.469880Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 1cb79427-48ee-44f1-ab9a-ba8580fd1033 · outbound

This paper cites and Mann, M.

Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing and Mann, M

Reference 68

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T14:48:13.368121Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Pith citing papers

Observation a3811c6c-4699-4231-a112-14204ff5635a · inbound

MemNovo: Look Back at the Spectrum for Balanced De Novo Peptide Sequencing from Mass Spectrometry cites this paper.

MemNovo: Look Back at the Spectrum for Balanced De Novo Peptide Sequencing from Mass Spectrometry Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing

Reference 20

Resolution: verified exact; arxiv_id, observed 2026-07-03T09:17:48.749562Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.