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Paper Citation Record · LEDGER

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences

As of 8 August 2026, this Paper Citation Record lists 28 of 28 outbound references and 1 inbound Pith citation observation for arXiv:2506.00147.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.00147 v1

Coverage vector

measured 28 of 28 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T12:15:53.790427Z

measured 29 of 29 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-05T12:34:44.326630Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-05T12:34:44.500699Z

Reference resolution

28 of 28 outbound references displayed

  • verified exact5
  • verified fuzzy8
  • unresolved15
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 7ecd2a7d-e3e1-49df-b00b-4189689335c1 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 1

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:58.391397Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:50.484702Z digest=sha256:661c6f17025f0d1e991be7d06d309115e754ec2ba40d7324c54ca6177842ad0b

Observation 9e553a92-57ec-42d8-8a7e-2b56e703b5b9 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 2

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:58.306260Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:50.574894Z digest=sha256:1664b09c21fba132b8762d34fa71dd145fcdb89320e1290c9a394cf5e7312966

Observation e6190d10-8b70-44c1-a80e-22777329e2ee · outbound

This paper cites & Chen, R.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Chen, R

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:58.172208Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:50.731864Z digest=sha256:e6d42b22305dad033585b60d526a281f0ed654e32b74412ba1e5f059c03a4f18

Observation 4b76ca8d-a7f1-4207-80c6-a91290c8e5e3 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 4

Resolution
unresolved
no resolver link, observed 2026-08-07T12:15:50.873538Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:15:50.873538Z digest=sha256:3ddd40326f27666b69264a95ccd4d79c222f8ccc40db36af9c2408ef6dbf9990

Observation df6c8eed-3fb5-462e-911d-bd9dbceab59f · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 5

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:58.068511Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation e743063a-4a09-4ebe-b3fe-20ddaa0ea2a0 · outbound

This paper cites & Deane, C.M.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Deane, C.M

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:57.902216Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:51.159901Z digest=sha256:848b2e29890814f0bba5a609d5df02fc5f95bb5fd8a78d335df4252b22ad6bf4

Observation 02f2cc04-fd8e-4d78-8c5e-32ae512c80aa · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 7

Resolution
verified exact
raw_fallback, observed 2026-08-07T12:15:55.254688Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:51.317522Z digest=sha256:ce2321d1c8465c7c6fe0faa6819d56b1cb7154274108799af8fde9123f5292be

Observation ce8928eb-3c6c-4301-a312-38a95e2ffc13 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 8

Resolution
unresolved
no resolver link, observed 2026-08-07T12:15:51.472221Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:15:51.472221Z digest=sha256:401bb3537959aa7b735f160a4a9f1b181b0ce561a0c07d2b02676a960a9aa310

Observation 7a40b20c-bf78-45a5-9bfd-c2cbf94e7e4c · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 9

Resolution
verified exact
raw_fallback, observed 2026-08-07T12:15:54.904547Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 7f3d4a4d-8f07-4b98-b482-6cc99b2bb831 · outbound

This paper cites & Schwede, T.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Schwede, T

Reference 10

Resolution
verified exact
raw_fallback, observed 2026-08-07T12:15:54.619263Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:51.876111Z digest=sha256:e3c3d407c24ba3fd5b4f89a25e5e0c2dd9600667701cfb63bfd81c02131a4e84

Observation bdf4f506-76a9-44c8-bcb0-9ddb0e143380 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 11

Resolution
verified exact
raw_fallback, observed 2026-08-07T12:15:54.353096Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:51.964028Z digest=sha256:71aee307e3cfe6f95903c384f2451de7bbf8b46d5aa5727e9b8756ba353f9158

Observation d5561542-03f8-4f7c-aa0d-c22cc7591183 · outbound

This paper cites Research Square (2025).

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Research Square (2025)

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:57.807636Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.048407Z digest=sha256:646a1ec1882b9935795fff09c0b51e1eb65e27d2f1664b0e6efd8c6f95eb39f8

Observation 61ac9970-6321-4cfd-9271-528b849aed4e · outbound

This paper cites & Anandkumar, A.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Anandkumar, A

Reference 13

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:57.701653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.139311Z digest=sha256:afa4844fb13bf11a63b56b8c342f646c4ddcff89b423ca6ce197d1e3008bc16d

Observation 89a6a9ea-10ea-4117-a9c9-4c1c760f4b2f · outbound

This paper cites Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2

Reference 14

Resolution
verified exact
local_arxiv, observed 2026-08-07T12:15:54.093899Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.195023Z digest=sha256:e587df6cba273191ff47b125b016dc07def0b380a617c88407b21febe6da4720

Observation f8b775c4-5f17-4155-9db5-9b97a10b598d · outbound

This paper cites & Misra, A.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Misra, A

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:57.593090Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.323829Z digest=sha256:1c07088ba7df8a77bd8b0132bc1bed67b835399f099250d1531b0aa7acbb728a

Observation 4a212cba-aaae-444a-b011-790ff7fdc60f · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 16

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:57.460800Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.478055Z digest=sha256:68a2cdecdb53fde76cece8623b4fc523fd20103f0dc099f15a6ad6cf9acb1235

Observation 6424e5df-8806-4941-90f3-4eb9257c752f · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 17

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:57.356095Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.564653Z digest=sha256:c157a88a72e49d1b2a3e582e930be677669915bd3dd6cbf79f3107f790282f0e

Observation 18cce144-1003-4980-9b14-fc9b7cdc7620 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 18

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:57.226820Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.640583Z digest=sha256:5233a0916a91b82e15353ab39a83bf4a6f83a1eaea94c6f9479785157a6d0b1a

Observation 786777f5-6525-410d-b27c-89fb2821f3a7 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 19

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:57.104045Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.701906Z digest=sha256:ddad77856d46e490899f3df6a8fc84e8a3825c632ca0e71d0dcf1206174aef35

Observation dd02e341-9ca6-40d9-bd9b-63ad5d47d9a5 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 20

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.921396Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:52.777306Z digest=sha256:c5b76176574671aa287e0e61a18bde93809681147a0a2da4ffb41d8dd6437c22

Observation 99f8fe73-0318-425c-80bf-9297ff52e8cd · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 21

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.753506Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

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Observation 554db2da-f0d6-4917-bfe9-f1f539f25416 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 22

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.548136Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.026057Z digest=sha256:d4f3bd0f857d3d5caf37cc5e4a8f968cbec744b1ef1b28d963b55d31a24460b8

Observation d0d0965c-c8bf-4a72-ab69-c2164b382e6c · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 23

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.337694Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.117869Z digest=sha256:a7463832e84f5801b6aeda65a1fe7796adfc9914546634d723dcb646a44a35d9

Observation 51f1db47-2b22-459f-989d-ee83242df99e · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 24

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:56.184349Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.243390Z digest=sha256:6f1a2f509a3b7534ec0ff00e57acf5cb11d5f906dbb58ebb89a613ce783d4750

Observation 011ea554-c483-464a-89be-ef81a3e6a014 · outbound

This paper cites & Shaw, D.E.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Shaw, D.E

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:56.006432Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.374241Z digest=sha256:1d8ef684117f3ebb004f95c26d8b912e55aa5c8dfeca6ad5175b2849a4b33f69

Observation ec72b50d-ce8c-4989-9703-fbf170338965 · outbound

This paper cites & Ghiringhelli, F.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Ghiringhelli, F

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:55.861658Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.535346Z digest=sha256:81827673674eb1ed1b9cb330980f845d00d9e7872511d2d84a3baf3572f09683

Observation 4c7555b2-9520-4cc8-96c1-5b7e2ecc84db · outbound

This paper cites & Torres, R.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences & Torres, R

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:15:55.701403Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.658433Z digest=sha256:131a16a65be96314d68e86a5df5eb97e1cd2677f858957f2abd1bcc3d6278102

Observation 410bd5a7-8f5b-4685-9bb2-04a8f922f190 · outbound

This paper cites an unresolved cited work.

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences Unresolved cited work

Reference 28

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:15:55.562907Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-07T12:15:53.790427Z digest=sha256:77c956210ba77d992a6bcabdbdd8a92445d70efdf2d822e0019cba1b399b3a25

Pith citing papers

Observation 4dbb3a55-cf59-4039-ad44-ece1450a4fd2 · inbound

OTMol: Robust Molecular Structure Comparison via Optimal Transport cites this paper.

OTMol: Robust Molecular Structure Comparison via Optimal Transport State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences

Reference 7

Resolution
verified exact
local_arxiv, observed 2026-08-05T12:34:44.507403Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-08T06:32:00.761636+00:00.

source=pdf_text observed=2026-08-05T12:34:44.326630Z digest=sha256:0b7dd09c601a8779e7239fb06c538a120a674ce7ded1bb6c9e05135e06cd6110